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Report for CCDS19431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19431.1 Public Mus musculus 5 Scarb2 23 108 98 CCDS HistoryNCBI Gene:12492Re-query CCDS DB by CCDS ID:19431.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031377.8 ENSMUSP00000031377.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031377.8Link to Ensembl Protein Viewer:ENSMUSP00000031377.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031377Re-query CCDS DB by Protein ID:ENSMUSP00000031377
Original member Current member NCBI NM_007644.4 NP_031670.1 Accepted alive Link to Nucleotide Sequence:NM_007644.4Link to Protein Sequence:NP_031670.1Re-query CCDS DB by Nucleotide ID:NM_007644Re-query CCDS DB by Protein ID:NP_031670Link to BLAST:NP_031670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031670.1 478 O35114 478 100% 0 0

Chromosomal Locations for CCDS 19431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92444246 92444284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92446304 92446462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92448545 92448596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92449871 92449944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92451347 92451465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92454040 92454209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92454732 92454851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92460042 92460133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92460754 92460942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92461937 92462084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92485197 92485354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92505192 92505308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGGCAGATGCTGCTTCTACACGGCGGGGACGCTGTCTCTGCTGCTGCTGGTGACCAGCGTCACGCTGC
TAGTGGCTCGAGTCTTTCAGAAGGCGGTAGACCAGACGATCGAGAAGAATATGGTATTACAAAATGGCAC
CAAGGTCTTTAATTCCTGGGAGAAGCCCCCTCTACCTGTGTACATCCAGTTTTATTTCTTCAATGTCACC
AATCCTGAGGAGATCCTCCAAGGAGAAATCCCCCTACTAGAAGAAGTGGGGCCATACACCTACAGGGAGC
TCCGGAACAAGGCAAATATTCAGTTTGGAGAAAATGGAACAACTATATCTGCTGTCACCAATAAGGCATA
TGTTTTTGAACGAAACCAATCTGTTGGAGATCCTAACGTTGACTTGATTAGAACAATAAATATTCCTCTG
TTGACTGTCGTGGATCTGGCCCAGCTGACCCTGCTCAGGGAGCTTATCGAAGCCATGCTGAAAGCCTATC
AGCAGAAGTTGTTTGTGATTCACACCGTGCACGAACTGCTCTGGGGCTACAAAGATGAGATCTTGTCCCT
CGTCCATATTTTCAAACCTGACGTCTCCCCGAATTTCGGCCTGTTCTATGAGAGAAATGGAACGAATGAC
GGGGAGTACGTGTTTCTGACTGGAGAGGACAATTACCTTAACTTTTCAAAAATCGTGGAGTGGAATGGAA
AAACGTCGCTGGACTGGTGGACCACAGACACATGCAATATGATTAACGGGACAGACGGAGACTCTTTTCA
TCCGCTGATAAGCAAGGATGAGGTCCTGTACCTCTTCCCGTCAGACTTGTGCAGGTCAGTACATATCACT
TTCAGCAGCTTTGAGAACGTAGAAGGACTGCCTGCTTTTCGGTATAAGGTGCCTGCAGAAATACTAGCCA
ACACCTCCGAAAACGCTGGCTTCTGTATACCCGAGGGAAACTGCATGGACTCAGGGGTGTTGAACATCAG
CATCTGCAAGAATGGTGCACCCATTATCATGTCTTTCCCACACTTTTACCAAGCCGACGAGAAGTTCGTT
TCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGGACATTAATCCCTTGACTG
GAATTATTTTGAGAGGGGCCAAGAGATTCCAGATCAACACTTACGTTAGGAAACTGGATGACTTTGTTGA
AACGGGAGACATCAGGACTATGGTTTTCCCAGTGATGTATCTCAATGAGAGTGTCCTCATTGACAAAGAG
ACCGCAAATCAACTGAAGTCTGTGATTAACACGACTTTGGTTGTCACCAACATACCCTACATCATTATGG
CACTGGGTGTGTTCTTTGGCTTGGTTTTCACGTGGCTGGCGTGTCGAGGACAGGGGTCTATGGATGAGGG
AACTGCAGATGAAAGAGCACCCCTCATACGAACCTAA

Translation (478 aa):
MGRCCFYTAGTLSLLLLVTSVTLLVARVFQKAVDQTIEKNMVLQNGTKVFNSWEKPPLPVYIQFYFFNVT
NPEEILQGEIPLLEEVGPYTYRELRNKANIQFGENGTTISAVTNKAYVFERNQSVGDPNVDLIRTINIPL
LTVVDLAQLTLLRELIEAMLKAYQQKLFVIHTVHELLWGYKDEILSLVHIFKPDVSPNFGLFYERNGTND
GEYVFLTGEDNYLNFSKIVEWNGKTSLDWWTTDTCNMINGTDGDSFHPLISKDEVLYLFPSDLCRSVHIT
FSSFENVEGLPAFRYKVPAEILANTSENAGFCIPEGNCMDSGVLNISICKNGAPIIMSFPHFYQADEKFV
SAIKGMHPNKEEHESFVDINPLTGIILRGAKRFQINTYVRKLDDFVETGDIRTMVFPVMYLNESVLIDKE
TANQLKSVINTTLVVTNIPYIIMALGVFFGLVFTWLACRGQGSMDEGTADERAPLIRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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