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Report for CCDS29905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29905.1 Public Mus musculus 19 Adra2a 23 108 98 CCDS HistoryNCBI Gene:11551Re-query CCDS DB by CCDS ID:29905.1See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 29905.1
The 5'-most in-frame translation initiation codon is selected for this CCDS based on good conservation across mammalian species. A possible downstream start codon would result in a protein that is 15 aa shorter at the N-terminus. The downstream start codon is assumed in the literature, including in PMIDs:1353249, 8843087 and 9482787, but there is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036700.6 ENSMUSP00000036203.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036700.6Link to Ensembl Protein Viewer:ENSMUSP00000036203.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036700Re-query CCDS DB by Protein ID:ENSMUSP00000036203
Original member Current member EBI ENSMUST00000237285.1 ENSMUSP00000157421.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237285.1Link to Ensembl Protein Viewer:ENSMUSP00000157421.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237285Re-query CCDS DB by Protein ID:ENSMUSP00000157421
Original member Current member NCBI NM_007417.5 NP_031443.4 Accepted alive Link to Nucleotide Sequence:NM_007417.5Link to Protein Sequence:NP_031443.4Re-query CCDS DB by Nucleotide ID:NM_007417Re-query CCDS DB by Protein ID:NP_031443Link to BLAST:NP_031443.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031443.4 465 Q01338 465 100% 0 0

Chromosomal Locations for CCDS 29905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54046215 54047612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGTTCCGCCAGGAGCAGCCGCTGGCCGAGGGCAGCTTTGCGCCCATGGGCTCACTGCAGCCGGATGCCG
GCAACAGCAGCTGGAACGGGACCGAAGCGCCCGGAGGCGGCACCCGAGCCACCCCTTACTCCCTGCAGGT
GACACTGACGCTGGTTTGCCTGGCTGGCCTGCTCATGCTGTTCACAGTATTTGGCAACGTGCTGGTTATT
ATCGCGGTGTTCACCAGTCGCGCGCTCAAAGCTCCCCAAAACCTCTTCCTGGTGTCCCTGGCCTCAGCGG
ACATCCTGGTGGCCACGCTGGTCATTCCCTTTTCTTTGGCCAACGAGGTTATGGGTTACTGGTACTTTGG
TAAGGTGTGGTGTGAGATCTATTTGGCTCTCGACGTGCTCTTTTGCACGTCGTCCATAGTGCACCTGTGC
GCCATCAGCCTTGACCGCTACTGGTCCATCACGCAGGCCATCGAGTACAACCTGAAGCGCACGCCGCGTC
GCATCAAGGCCATCATTGTCACCGTGTGGGTCATCTCGGCTGTCATCTCCTTCCCGCCACTCATCTCCAT
AGAGAAGAAGGGCGCTGGCGGCGGGCAGCAGCCGGCCGAGCCAAGCTGCAAGATCAACGACCAGAAGTGG
TATGTCATCTCCTCGTCCATCGGTTCCTTCTTCGCGCCTTGCCTCATCATGATCCTGGTCTACGTGCGTA
TTTACCAGATCGCCAAGCGTCGCACCCGCGTGCCTCCCAGCCGCCGGGGTCCGGACGCCTGTTCCGCGCC
GCCGGGGGGCGCCGATCGCAGGCCCAACGGGCTGGGCCCGGAGCGCGGCGCGGGTCCCACGGGCGCTGAG
GCGGAGCCGCTGCCCACCCAGCTTAACGGTGCCCCGGGGGAGCCCGCGCCCGCCGGGCCCCGCGATGGGG
ATGCGCTGGACCTAGAGGAGAGTTCGTCGTCCGAGCACGCCGAGCGGCCCCCGGGGCCCCGCAGACCCGA
CCGCGGCCCCCGAGCCAAGGGCAAGACCCGGGCGAGTCAGGTGAAGCCGGGGGACAGTCTGCCGCGGCGC
GGGCCCGGGGCCGCGGGGCCGGGGGCTTCGGGGTCCGGGCACGGAGAGGAGCGCGGCGGGGGCGCCAAAG
CGTCGCGCTGGCGCGGGAGGCAAAACCGGGAGAAACGCTTCACGTTCGTGCTGGCGGTGGTGATCGGCGT
GTTCGTGGTGTGTTGGTTTCCGTTCTTTTTCACCTACACGCTCATAGCGGTCGGCTGCCCGGTGCCCAGC
CAGCTCTTCAACTTCTTCTTCTGGTTCGGCTACTGCAACAGCTCGCTGAACCCTGTTATCTACACCATCT
TCAACCACGACTTCCGACGCGCCTTCAAGAAGATCCTCTGCCGTGGGGACAGAAAACGCATCGTGTGA

Translation (465 aa):
MFRQEQPLAEGSFAPMGSLQPDAGNSSWNGTEAPGGGTRATPYSLQVTLTLVCLAGLLMLFTVFGNVLVI
IAVFTSRALKAPQNLFLVSLASADILVATLVIPFSLANEVMGYWYFGKVWCEIYLALDVLFCTSSIVHLC
AISLDRYWSITQAIEYNLKRTPRRIKAIIVTVWVISAVISFPPLISIEKKGAGGGQQPAEPSCKINDQKW
YVISSSIGSFFAPCLIMILVYVRIYQIAKRRTRVPPSRRGPDACSAPPGGADRRPNGLGPERGAGPTGAE
AEPLPTQLNGAPGEPAPAGPRDGDALDLEESSSSEHAERPPGPRRPDRGPRAKGKTRASQVKPGDSLPRR
GPGAAGPGASGSGHGEERGGGAKASRWRGRQNREKRFTFVLAVVIGVFVVCWFPFFFTYTLIAVGCPVPS
QLFNFFFWFGYCNSSLNPVIYTIFNHDFRRAFKKILCRGDRKRIV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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