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Report for CCDS38777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38777.1 Public Mus musculus 4 Akna 23 108 98 CCDS HistoryNCBI Gene:100182Re-query CCDS DB by CCDS ID:38777.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035724.4 ENSMUSP00000041614.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035724.4Link to Ensembl Protein Viewer:ENSMUSP00000041614.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035724Re-query CCDS DB by Protein ID:ENSMUSP00000041614
Original member NCBI NM_001045514.3 NP_001038979.1 Updated not alive Link to Nucleotide Sequence:NM_001045514.3Link to Protein Sequence:NP_001038979.1Re-query CCDS DB by Nucleotide ID:NM_001045514Re-query CCDS DB by Protein ID:NP_001038979
Current member NCBI NM_001045514.4 NP_001038979.1 Accepted alive Link to Nucleotide Sequence:NM_001045514.4Link to Protein Sequence:NP_001038979.1Re-query CCDS DB by Nucleotide ID:NM_001045514Re-query CCDS DB by Protein ID:NP_001038979Link to BLAST:NP_001038979.1
Original member NCBI NM_001305432.1 NP_001292361.1 Updated not alive Link to Nucleotide Sequence:NM_001305432.1Link to Protein Sequence:NP_001292361.1Re-query CCDS DB by Nucleotide ID:NM_001305432Re-query CCDS DB by Protein ID:NP_001292361
Current member NCBI NM_001305432.2 NP_001292361.1 Accepted alive Link to Nucleotide Sequence:NM_001305432.2Link to Protein Sequence:NP_001292361.1Re-query CCDS DB by Nucleotide ID:NM_001305432Re-query CCDS DB by Protein ID:NP_001292361Link to BLAST:NP_001292361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038979.1 1404 Q80VW7-1 1404 100% 0 0
NP_001292361.1 1404 Q80VW7-1 1404 100% 0 0

Chromosomal Locations for CCDS 38777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 63368046 63368286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63370472 63370652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63370892 63371011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63371797 63371892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63373323 63373469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63373997 63374112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63374357 63374530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63376831 63376993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63377652 63377860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63378570 63378676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63379155 63379374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63379888 63380088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63380199 63380362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63381728 63381929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63382343 63382470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63383887 63383946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63386230 63386384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63386997 63387153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63392132 63392206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63394586 63395634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63397875 63398124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4215 nt):
ATGGCCAGCTCAGGGGCAAAGGCACAATGGGTTGGGCCAAGCCTGGGGCAAGGGCCCCGAAGGCGGCGCT
GGGCTTGGGCTGAGGAACAAGATACAGATGGAAGAAGAGACCAGGGCTGGGGAAACAGCCAGTCTCTTCC
CGAAGCCCCCAGTCCTGAGCTCCTAGAGGACTTCCGTCGGGCACAGGAGCACCTGCCACCCCTGGAGTGG
GACCCAGACATGCAGGACTCCGAAGAGTCTTCTGGAGAAGAGACCGAAGCTGACGATGCAAGCAGCCCAG
AGGGTTCCACCGTGCCTCTGCCCTGGCTCTCCAGGAGCAACCAACAGCTGGACATGTCTGAAGAGGAGCT
GGATGAGGCCTCTGGGAGGCCTGAGGTAGACTTAGCTGGAGAGAGTTGTACGGAGCTTGAGTGTGAAGAC
CAGGGAGATTCCAGCCCTCCACCTCCAGGACAGGGGCCAGCCAAAGGCTGGGTCACCTTTATCAAACAAG
GCAGTAACTACAGACCTTCAGAGCATCTCGAGGCCCAGCCATCTGTTGAACATAGCCGCACAAAGTCTTG
GAGCAGTGGAACTGTGAGCCTCCGTCAACCTAGTGACAGCCTTGGTTCTACCTGGGAAGGAGATACCGAA
GTCCCTCAGCCTTCCATCTTGCCCAAAGCCCTGCCACAGAGTCCGTGCCACAACTTTCCACACCCAGGTG
ACAGAAATGGAGGTGACGTTGCTCCGGCAACACCCACAGAATTCCGGGACTCCTTAGCAGCGCCAGCCCA
GAATGCCGAGTGCTCTGCAGGCACGTGGGGGGAAGAAACCACCAGCCTACCCAGCTCTCGGCCTGAGGAC
CAAACCTGGAAGAGGACTAAGACATCACCTAAGCCACTGCCCTCCCGGTTTACTGGTTCTGTCAGCCCCC
TGAGTACTCGGCTTGGGGCAATAAAGAAAGTTGTGCCCCAGCACAAGCAGGGAGCCACTCTGGCTGGTCA
CTCTTCTTCACAAGCTCCCAAGTATGGCAGGGGGCGCCGCCTGAACTACCCACTCCCCGACTTCTCCAAG
GTGGGGCCCCGGGTGAGGTTTCCCAAAGATGAGAACTACCGACCCCCGAAGTCCAGAGGCCACAACAGGC
AACAAGGCTCTACCAGACCCCTCATCTTCAAGTCGCCAGCTGAGATTGTTCGGGATGTACTGTTGAGTAG
TGGAGAGGCGTCCCTGGCCAAGGAATCTTCTCTTGCTCACACCATCACCAGGGTGCCCCAGGAGTTCCAG
ACACCCGAACAAGCCACTGAGCTAGTTCATCAGCTCCAGGAGGACTATCACAAGCTCCTCACCAAGTATG
CGGAGGCTGAGAACACTATCGACCAACTTCGCCTTGGGGCCAAGGTGCACCTGTATTCAGACCCACCACA
GCCCAGTCAGAGCTTCTGCTCGGGGTCAATGCCACAAGGAAGCAAGGTCTTATCCTTCTCTATCCCGCAA
CCCAGAGTAGCAGAGTGGTGGCCTGACCCTGCCCAGGATCCACAGGCCTCTGAGGCCACAGGGTGGCCGT
TCCCACGAACAGACCTGAGTCCCTCCTCGTCCCCCGGCGTGGCCACTCCAGGGCGGCTTCCTCAGAGCCA
GGGCATTGCCACAGACCAGCCCTCCACAGGACAGACCCAGGCACTGACCTCTCAGGCCAGCCGGCTCCTG
GCCAAGGTGCAGTCCTTCGAGGAACTGGTACTGGCTGGACACCTCCCACCTCAGGACCAAATCAAGAGCT
TGGAGCAACTGAGGGCAGCCCACATGGCCCTAGAGGCAGAGTACCTGCAGGCCTGCAGAGAAGAGCTCCT
GGACCCTCAGCTTGATGCCTCTCAGGGGAGTCCCAGGACCCTCAACCTCTGCAGGGAGCTAGAAGCAGAG
ATATACCACCTGGGACAGCGCCTGGAAGAGCTACAGGACCATATGGACCAGACCCAAAGAGAGACAGAGC
CATGTAGGCCAGACCTGCAAGACAGCACCCCAACCATGTCCTTTCTGCCCCAGTCAGCTCATCTGTCCAT
GCCTTCAGGACCTGTCTCCTTGCCAGATGGCCAAACCTACCAGGAGCCTGCCACCACCACCACCACCTCC
CCTGGAAGCTCTTGCACGCTCCCCATCAACAAGAAGTTAAGCCTGAGCATCAAAACTGAGGAAAGCCCAA
GAGGTCTCCCGGTCCCACTCAGGGACAGGACGCTTCAGGTGGAGCAGGACTTCCATGGCCTTCTGGAGAG
ATACCTCAGCGTTAAATCCCTCCCTGAAGCCTTGAGGGATGAAGATGAGGATGACCTGGAGGAGGAGGAA
GAGGAGCAGGACCATCAAGGCCCCTTGGAAGTTGATAGTCCAGCCACAGCTCCAGGGAAAACAGAAGCCG
TGAGGGTACCACCAGGAGAGCGCCCAACACAGGCTGAGGAAAGCCATAGGGATGCTACCCAGGAGGATGA
GGAACAGATGGGACCTATGAAGTCACCAGACTTCCGGCCATCCATGGCCAGAGATACGTACACACCAGTC
CTGGATACAGCTGAAGTGGCTCAACGGGGCACCAAAGCCATGGTGTCACATCAGAGCAGTCTGACCAGCC
TGGAAGAGAGCAGGCCCTCAGAGCTCCTTCCTCGAAAAGCCCTGCTTCGGGCTGGTGGGCCCCACACTGA
GGAGCCCTGGATGGTGTCACCAGAGACAGACAGTGGCTTCGTGGGCTCAGAAACCAGTATAGTGTCACCC
TTCACCCAGACCCCAGAGCACCGGCTCTCCCATGTCAGCACTTCAGGACCATCAGCTCAACACCTCACTG
CCTCTGTGCCTGGTGATAGAACCTCCCATCCCAAGGCCAGGGGTCTCATGGTTCCCAGAAGAGCCACTGA
GACTGGCATACCCAGAAGCCGAACCCAGCAGCATTTCTCCAGCCTGAGCTCTCCCGGGAGAGGGGCACAG
AGCTGCCACCTAGAGGAGACATCAGTGGCTAAAATAGCGGTTCCCAGGTCTGAGTTCAAGAGACAGAAGC
AGATTTCCAAACAGCTCCTTCCCAGTGGAAGAACCAGCCCCGACTCTGCCCCAGCTCCCACAGCTGCCTC
CACGCCCCATGGATCAGCAGAGAGCACTGCCAACCTCCTCCTCAACAGGACAGAGCGCGACCAGGCCATC
AAGGATCTGCAGGCGGAGGTGTCACGGCTCCGCCTTCAACTGGAGGACAGCCTGCACCGGCCACACCCAG
ACGGCCCAGCCTGTGTAGCTTCTGCTTTCAACCACTCCACCCAGACCCAGGAAAAGCTGGGTTCCTCACC
CTCCTGGGGCCCCCACTATGGCAGTAAATCCACAGAGAGGCTGTCTAGGGAGCCTAATGGTGTAGAGCCA
GCTGAGCCAATGGGAAGACGTCGAGCCAGGTCCTCTTCGGTGCCTCGGGATGTACCCAGACTGTACCTAA
GTTCTGAATCGGAGTCGCCTGCCCCTCGGCTCTCATCTGAGAAGAGCAGGACCTTTGAGGAGCACCCCGA
GGCTGCACAGTGGGGGACAAGACCACAGAGCAGCTCGAAGCGGAGGGAAAGAGTTTCCTTCCGGGGTCAA
TACACAGGCCAGGAGTACCACATTCTATCCCCAAAGGCCATCCTGAAGGACAGTGGCACACCGTCCTGTC
CCCACTGCCATCCCATTAGGACCCAGGACACAGGCAGTGCTGTCTCTAGAGACACCACACGGGGCTCATC
TGCCGCTGACACCCTCCGCTGTGCCCTGTGTGGTGAAGTCAAGTCCTCTGCAGAAGCAGATGGCTCCAGC
TCAGGTCCCTCTGAGAAGAACACCCCCAAAAAGCCTTCCACCCCCATCCTCAAACGGAAGAACAGGCAGA
CGGGCTCGCCAGTACGAATGGCCCCTGGACTCTGGTACCTGGCTGCTGCGCCCCCAGCCCCAGCCCCACC
GGCTTTGGCCTACATCTCCTCAGCTCCCATTATGCCTTATCTACCACCCACTGTGTACTATGCAGCCCCA
GCACCTACCTCAGCCCAGACAGCTTCCCCGCAGCCTGCTCGGGGACCTCGGAGAACCCGGCACTCAGTCC
AACTGGGTCTGAATGACCTGGAGGAGCTGCAGGCCGCACTCAGAGAGGCTGCACAGGCCGCCGAGAACGT
TCGCTCCACCACCCGCCAGCTGAGCCGCTCCCTGTCTGCGGACCTGCGCCATGCCCGTAGCCTGCGAGGC
TCCTGCCTTTTCTGA

Translation (1404 aa):
MASSGAKAQWVGPSLGQGPRRRRWAWAEEQDTDGRRDQGWGNSQSLPEAPSPELLEDFRRAQEHLPPLEW
DPDMQDSEESSGEETEADDASSPEGSTVPLPWLSRSNQQLDMSEEELDEASGRPEVDLAGESCTELECED
QGDSSPPPPGQGPAKGWVTFIKQGSNYRPSEHLEAQPSVEHSRTKSWSSGTVSLRQPSDSLGSTWEGDTE
VPQPSILPKALPQSPCHNFPHPGDRNGGDVAPATPTEFRDSLAAPAQNAECSAGTWGEETTSLPSSRPED
QTWKRTKTSPKPLPSRFTGSVSPLSTRLGAIKKVVPQHKQGATLAGHSSSQAPKYGRGRRLNYPLPDFSK
VGPRVRFPKDENYRPPKSRGHNRQQGSTRPLIFKSPAEIVRDVLLSSGEASLAKESSLAHTITRVPQEFQ
TPEQATELVHQLQEDYHKLLTKYAEAENTIDQLRLGAKVHLYSDPPQPSQSFCSGSMPQGSKVLSFSIPQ
PRVAEWWPDPAQDPQASEATGWPFPRTDLSPSSSPGVATPGRLPQSQGIATDQPSTGQTQALTSQASRLL
AKVQSFEELVLAGHLPPQDQIKSLEQLRAAHMALEAEYLQACREELLDPQLDASQGSPRTLNLCRELEAE
IYHLGQRLEELQDHMDQTQRETEPCRPDLQDSTPTMSFLPQSAHLSMPSGPVSLPDGQTYQEPATTTTTS
PGSSCTLPINKKLSLSIKTEESPRGLPVPLRDRTLQVEQDFHGLLERYLSVKSLPEALRDEDEDDLEEEE
EEQDHQGPLEVDSPATAPGKTEAVRVPPGERPTQAEESHRDATQEDEEQMGPMKSPDFRPSMARDTYTPV
LDTAEVAQRGTKAMVSHQSSLTSLEESRPSELLPRKALLRAGGPHTEEPWMVSPETDSGFVGSETSIVSP
FTQTPEHRLSHVSTSGPSAQHLTASVPGDRTSHPKARGLMVPRRATETGIPRSRTQQHFSSLSSPGRGAQ
SCHLEETSVAKIAVPRSEFKRQKQISKQLLPSGRTSPDSAPAPTAASTPHGSAESTANLLLNRTERDQAI
KDLQAEVSRLRLQLEDSLHRPHPDGPACVASAFNHSTQTQEKLGSSPSWGPHYGSKSTERLSREPNGVEP
AEPMGRRRARSSSVPRDVPRLYLSSESESPAPRLSSEKSRTFEEHPEAAQWGTRPQSSSKRRERVSFRGQ
YTGQEYHILSPKAILKDSGTPSCPHCHPIRTQDTGSAVSRDTTRGSSAADTLRCALCGEVKSSAEADGSS
SGPSEKNTPKKPSTPILKRKNRQTGSPVRMAPGLWYLAAAPPAPAPPALAYISSAPIMPYLPPTVYYAAP
APTSAQTASPQPARGPRRTRHSVQLGLNDLEELQAALREAAQAAENVRSTTRQLSRSLSADLRHARSLRG
SCLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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