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Report for CCDS36336.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36336.1 Public Mus musculus 11 Arl4d 21 106 86 CCDS HistoryNCBI Gene:80981Re-query CCDS DB by CCDS ID:36336.1Re-query CCDS DB by GeneID:80981See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Sequence IDs included in CCDS 36336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member EBI ENSMUST00000039388 ENSMUSP00000035918 Accepted not alive Link to Ensembl Transcript Viewer:ENSMUST00000039388Link to Ensembl Protein Viewer:ENSMUSP00000035918Re-query CCDS DB by Nucleotide ID:ENSMUST00000039388Re-query CCDS DB by Protein ID:ENSMUSP00000035918
Original member Current member EBI OTTMUST00000034028 OTTMUSP00000015245 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000034028Link to Vega Protein Viewer:OTTMUSP00000015245Re-query CCDS DB by Nucleotide ID:OTTMUST00000034028Re-query CCDS DB by Protein ID:OTTMUSP00000015245
Original member Current member NCBI NM_025404.3 NP_079680.1 Accepted alive Link to Nucleotide Sequence:NM_025404.3Link to Protein Sequence:NP_079680.1Re-query CCDS DB by Nucleotide ID:NM_025404Re-query CCDS DB by Protein ID:NP_079680Link to BLAST:NP_079680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079680.1 201 Q99PE9 201 100% 0 0

Chromosomal Locations for CCDS 36336.1

Assembly GRCm38.p4 (GCF_000001635.24)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101666650 101667255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGGGAACCACTTGACTGAAATGGCCCCTACAGCCTCGTCCTTTCTGCCGCACTTCCAGGCCCTGCATG
TCGTCGTCATTGGGTTGGATTCCGCGGGGAAGACTTCCCTTCTTTACCGTCTCAAGTTCAAGGAGTTTGT
CCAGAGCGTCCCCACCAAGGGCTTTAATACTGAGAAGATCCGCGTGCCCCTGGGGGGTTCCCGTGGGATC
ACTTTCCAAGTGTGGGATGTTGGGGGTCAGGAGAAGCTTCGGCCACTGTGGCGCTCCTACACCCGCCGGA
CAGATGGACTGGTGTTTGTGGTGGACTCTGCAGAGACTGAGAGGTTAGAGGAAGCCAGAATGGAGTTACA
CCGGATCAGCAAGGCTTCCGACAACCAGGGGGTGCCAGTGCTGGTGCTGGCCAACAAGCAGGACCAACCG
GGGGCACTGAGTGCAGCCGAGGTGGAGAAGAGGCTGGCGGTCCGAGAGCTGGCAGCTGCCACGCTCACCC
ATGTGCAGGGCTGCAGTGCTGTGGACGGGCTGGGCCTGCAGCCAGGCCTGGAACATTTGTATGAAATGAT
CCTGAAGAGGAAGAAGGCACCTCGGTCGAGCAAGAAGAGACGGTGA

Translation (201 aa):
MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGI
TFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAETERLEEARMELHRISKASDNQGVPVLVLANKQDQP
GALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQPGLEHLYEMILKRKKAPRSSKKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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