NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46308.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46308.1 Public Homo sapiens 2 SPRED2 20 108 85 CCDS HistoryNCBI Gene:200734Re-query CCDS DB by CCDS ID:46308.1Re-query CCDS DB by GeneID:200734See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Sequence IDs included in CCDS 46308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000443619 ENSP00000393697 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000443619Link to Ensembl Protein Viewer:ENSP00000393697Re-query CCDS DB by Nucleotide ID:ENST00000443619Re-query CCDS DB by Protein ID:ENSP00000393697
Original member Current member EBI OTTHUMT00000376661 OTTHUMP00000225519 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000376661Link to Vega Protein Viewer:OTTHUMP00000225519Re-query CCDS DB by Nucleotide ID:OTTHUMT00000376661Re-query CCDS DB by Protein ID:OTTHUMP00000225519
Original member NCBI NM_001128210.1 NP_001121682.1 Accepted not alive Link to Nucleotide Sequence:NM_001128210.1Link to Protein Sequence:NP_001121682.1Re-query CCDS DB by Nucleotide ID:NM_001128210Re-query CCDS DB by Protein ID:NP_001121682Link to BLAST:NP_001121682.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121682.1 415 Q7Z698-2 415 100% 0 0

Chromosomal Locations for CCDS 46308.1

Assembly GRCh38.p7 (GCF_000001405.33)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 65313501 65314169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 65316734 65316883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 65331987 65332051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 65334605 65334773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 65344719 65344896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2
2 65366590 65366606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2Link to Vega Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGCATCGCCTGGCAGTGACAGCTATATTGTGCGTGTCAAGGCTGTGGTTATGACCAGAGATGACTCCA
GCGGGGGATGGTTCCCACAGGAAGGAGGCGGGATCAGTCGCGTCGGGGTCTGTAAGGTCATGCACCCCGA
AGGCAATGGACGAAGCGGCTTTCTCATCCATGGTGAACGACAGAAAGACAAACTGGTGGTATTGGAATGC
TATGTAAGAAAGGACTTGGTCTACACCAAAGCCAATCCAACGTTTCATCACTGGAAGGTCGATAATAGGA
AGTTTGGACTTACTTTCCAAAGCCCTGCTGATGCCCGAGCCTTTGACAGGGGAGTAAGGAAAGCAATCGA
AGACCTTATAGAAGGTTCAACAACGTCATCTTCCACCATCCATAATGAAGCTGAGCTTGGCGATGATGAC
GTTTTTACAACAGCTACAGACAGTTCTTCTAATTCCTCTCAGAAGAGAGAGCAACCTACTCGGACAATCT
CCTCTCCCACATCCTGTGAGCACCGGAGGATTTATACCCTGGGCCACCTCCACGACTCATACCCCACAGA
CCACTATCACCTCGATCAGCCGATGCCAAGGCCCTACCGCCAGGTGAGCTTCCCGGACGACGACGAGGAG
ATCGTGCGCATCAACCCCCGGGAGAAGATCTGGATGACGGGGTACGAGGATTACCGGCACGCACCCGTCA
GGGGCAAGTACCCGGACCCCTCGGAGGACGCGGACTCCTCCTACGTGCGCTTCGCCAAGGGCGAGGTCCC
CAAGCATGACTACAACTACCCCTACGTGGACTCCTCAGACTTTGGCCTAGGCGAGGACCCCAAAGGCCGC
GGGGGCAGCGTGATCAAGACGCAGCCCTCCCGGGGCAAGTCGCGGCGGCGGAAGGAGGACGGAGAGCGCT
CGCGGTGCGTGTACTGCAGGGACATGTTCAACCACGAGGAGAACCGCCGGGGCCACTGCCAGGACGCGCC
CGACTCCGTGAGAACTTGCATCCGCCGGGTGAGCTGCATGTGGTGCGCGGACAGCATGCTCTATCACTGT
ATGTCGGACCCCGAGGGAGACTATACAGACCCTTGCTCGTGCGATACTAGCGACGAGAAGTTTTGCCTCC
GGTGGATGGCTCTTATTGCCTTGTCTTTCCTGGCCCCCTGTATGTGCTGTTACCTGCCCCTTCGGGCCTG
CTACCACTGCGGAGTGATGTGCAGGTGCTGTGGCGGGAAGCACAAAGCGGCCGCGTGA

Translation (415 aa):
MASPGSDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLEC
YVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTIHNEAELGDDD
VFTTATDSSSNSSQKREQPTRTISSPTSCEHRRIYTLGHLHDSYPTDHYHLDQPMPRPYRQVSFPDDDEE
IVRINPREKIWMTGYEDYRHAPVRGKYPDPSEDADSSYVRFAKGEVPKHDYNYPYVDSSDFGLGEDPKGR
GGSVIKTQPSRGKSRRRKEDGERSRCVYCRDMFNHEENRRGHCQDAPDSVRTCIRRVSCMWCADSMLYHC
MSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACYHCGVMCRCCGGKHKAAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH