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Report for CCDS7502.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7502.1 Public Homo sapiens 10 MRPL43 18 107 79 CCDS HistoryNCBI Gene:84545Re-query CCDS DB by CCDS ID:7502.1Re-query CCDS DB by GeneID:84545See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Sequence IDs included in CCDS 7502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000318325 ENSP00000315364 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000318325Link to Ensembl Protein Viewer:ENSP00000315364Re-query CCDS DB by Nucleotide ID:ENST00000318325Re-query CCDS DB by Protein ID:ENSP00000315364
Original member Current member EBI OTTHUMT00000049902 OTTHUMP00000020304 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000049902Link to Vega Protein Viewer:OTTHUMP00000020304Re-query CCDS DB by Nucleotide ID:OTTHUMT00000049902Re-query CCDS DB by Protein ID:OTTHUMP00000020304
Original member NCBI NM_176792.2 NP_789762.1 Accepted not alive Link to Nucleotide Sequence:NM_176792.2Link to Protein Sequence:NP_789762.1Re-query CCDS DB by Nucleotide ID:NM_176792Re-query CCDS DB by Protein ID:NP_789762Link to BLAST:NP_789762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789762.1 215 Q8N983-1 215 100% 0 0

Chromosomal Locations for CCDS 7502.1

Assembly GRCh38.p2 (GCF_000001405.28)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10Link to Vega Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 100979253 100979372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10Link to Vega Genome Browser on chromosome 10
10 100983755 100983817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10Link to Vega Genome Browser on chromosome 10
10 100986749 100986975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10Link to Vega Genome Browser on chromosome 10
10 100987090 100987196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10Link to Vega Genome Browser on chromosome 10
10 100987313 100987443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10Link to Vega Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGACGGCGCGCGGGACTCCGAGCCGCTTCTTGGCCAGCGTTCTCCACAACGGACTGGGTCGCTATGTGC
AGCAGCTGCAGCGTCTGAGCTTCAGCGTCAGCCGCGACGGCGCCTCGTCTCGCGGCGCCAGGGAGTTCGT
GGAGCGGGAGGTGATCGACTTCGCCCGACGGAATCCAGGGGTCGTAATATATGTAAACTCGCGTCCGTGC
TGCGTGCCCAGAGTAGTGGCCGAATACCTTAACGGGGCTGTGCGCGAGGAGAGCATCCACTGCAAGTCGG
TCGAGGAGATCTCGACGCTGGTGCAGAAGCTGGCCGACCAGTCGGGCTTGGACGTGATCCGCATCCGCAA
GCCCTTCCACACCGACAACCCTAGCATCCAGGGCCAGTGGCACCCCTTCACCAACAAGCCGACCACGTTC
CGCGGGCTACGCCCCCGAGAGGTTCAGGATCCTGCCCCAGCCCAGGACACTGGCCTGAGACTGTCTGCAG
TTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCACCAGACCTCCCCACAGTGGATCCTATCTCATC
CTCATTGACCTCTGCTCCAGCCCCTATGCTGTCCGCAGTTTCTTGCCTCCCGATTGTCCCTGCACTGACC
ACTGTGTGCTCAGCGTGA

Translation (215 aa):
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPC
CVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQWHPFTNKPTTF
RGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLTSAPAPMLSAVSCLPIVPALT
TVCSA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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