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Report for CCDS48078.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48078.1 Public Homo sapiens X TBL1X 17 106 76 CCDS HistoryNCBI Gene:6907Re-query CCDS DB by CCDS ID:48078.1Re-query CCDS DB by GeneID:6907See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Sequence IDs included in CCDS 48078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000380961 ENSP00000370348 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000380961Link to Ensembl Protein Viewer:ENSP00000370348Re-query CCDS DB by Nucleotide ID:ENST00000380961Re-query CCDS DB by Protein ID:ENSP00000370348
Original member EBI ENST00000424279 ENSP00000394097 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000424279Link to Ensembl Protein Viewer:ENSP00000394097Re-query CCDS DB by Nucleotide ID:ENST00000424279Re-query CCDS DB by Protein ID:ENSP00000394097
Original member Current member EBI OTTHUMT00000055708 OTTHUMP00000022879 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000055708Link to Vega Protein Viewer:OTTHUMP00000022879Re-query CCDS DB by Nucleotide ID:OTTHUMT00000055708Re-query CCDS DB by Protein ID:OTTHUMP00000022879
Original member Current member NCBI NM_001139467.1 NP_001132939.1 Accepted alive Link to Nucleotide Sequence:NM_001139467.1Link to Protein Sequence:NP_001132939.1Re-query CCDS DB by Nucleotide ID:NM_001139467Re-query CCDS DB by Protein ID:NP_001132939Link to BLAST:NP_001132939.1
Original member Current member NCBI NM_001139468.1 NP_001132940.1 Accepted alive Link to Nucleotide Sequence:NM_001139468.1Link to Protein Sequence:NP_001132940.1Re-query CCDS DB by Nucleotide ID:NM_001139468Re-query CCDS DB by Protein ID:NP_001132940Link to BLAST:NP_001132940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001132939.1 526 O60907-2 526 100% 0 0
NP_001132940.1 526 O60907-2 526 100% 0 0

Chromosomal Locations for CCDS 48078.1

Assembly GRCh38 (GCF_000001405.26)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9654265 9654322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9684043 9684188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9688017 9688275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9691579 9691711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9692113 9692254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9693149 9693212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9693322 9693419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9697369 9697429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9704993 9705114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9709248 9709322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9709633 9709760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9711611 9711776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9714902 9715003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X
X 9716220 9716246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XLink to Vega Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGAGCATAACCAGTGACGAGGTGAACTTTCTGGTGTATCGGTATCTCCAGGAGTCAGGTTTTTCCCACT
CGGCTTTCACGTTTGGGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACGCTAGTGCCACCGGC
CGCCCTCATCTCCATTCTCCAGAAGGGCCTGCAGTATGTAGAGGCCGAGATCAGTATCAACGAGGATGGC
ACAGTGTTCGACGGCCGCCCCATAGAGTCCCTGTCACTGATAGACGCCGTGATGCCCGACGTGGTGCAGA
CGCGGCAGCAGGCATTCCGAGAGAAGCTCGCTCAGCAGCAAGCCAGTGCGGCGGCGGCGGCGGCTGCGGC
CACGGCAGCAGCGACAGCAGCCACCACGACCTCAGCCGGCGTTTCCCACCAAAATCCATCGAAGAACAGA
GAGGCCACGGTGAATGGGGAAGAGAACAGAGCACATTCAGTCAATAATCACGCGAAGCCAATGGAAATAG
ATGGAGAGGTTGAGATTCCATCCAGCAAAGCCACAGTCCTTCGGGGCCATGAGTCTGAGGTGTTCATTTG
TGCCTGGAATCCTGTCAGTGATTTGCTAGCCTCCGGATCTGGAGACTCAACTGCAAGGATATGGAACCTG
AATGAGAATAGCAACGGGGGCTCCACCCAGCTCGTGTTGAGGCACTGTATACGAGAGGGGGGCCATGACG
TCCCGAGTAACAAAGACGTCACCTCACTGGACTGGAATACCAATGGAACACTCTTGGCTACGGGTTCATA
TGACGGTTTTGCAAGAATATGGACGGAAGATGGTAACCTGGCCAGCACCTTAGGCCAACATAAAGGCCCC
ATCTTTGCCTTGAAATGGAACCGAAAGGGGAATTACATTTTGAGTGCTGGTGTAGACAAAACAACAATAA
TTTGGGATGCCCACACAGGAGAAGCCAAACAGCAGTTTCCTTTTCATTCAGCCCCTGCCCTTGATGTGGA
CTGGCAGAACAACACGACCTTTGCCTCCTGTAGCACAGACATGTGTATCCATGTGTGCAGGCTCGGCTGT
GACCGCCCAGTCAAAACCTTCCAGGGACACACAAACGAGGTCAACGCCATCAAATGGGATCCGTCTGGAA
TGTTGCTGGCATCCTGCTCGGATGACATGACATTGAAGATCTGGAGCATGAAACAGGAGGTGTGCATCCA
TGATCTTCAGGCTCACAATAAAGAGATCTACACCATCAAGTGGAGCCCCACTGGGCCCGCCACCAGCAAC
CCAAACTCCAACATCATGTTGGCAAGTGCTTCGTTTGATTCTACGGTGCGACTGTGGGACATAGAACGAG
GCGTCTGCACCCACACGCTCACGAAGCATCAGGAGCCTGTCTATAGCGTAGCTTTCAGCCCTGATGGGAA
GTACTTGGCCAGTGGATCCTTCGACAAGTGCGTCCATATCTGGAATACTCAGAGTGGAAATCTTGTCCAC
AGCTACCGAGGCACTGGCGGCATCTTCGAGGTGTGCTGGAACGCCCGAGGAGACAAAGTGGGTGCCAGCG
CGTCCGACGGCTCTGTGTGTGTTTTGGATCTGCGGAAGTAA

Translation (526 aa):
MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDG
TVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKNR
EATVNGEENRAHSVNNHAKPMEIDGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNL
NENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQHKGP
IFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGC
DRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSN
PNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVH
SYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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