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SRX477951: Oryza Genome Evolution(OGE)- Transcriptome experiments
1 ILLUMINA (Illumina HiSeq 2000) run: 207.5M spots, 41.5G bases, 25.4Gb downloads

Submitted by: University of Arizona
Study: International Rice Genome Sequencing Project
show Abstracthide Abstract
IRGSP is a <a href="http://rgp.dna.affrc.go.jp/IRGSP/members.html">consortium</a> of publicly funded members from ten different countries that sequenced the genome of <b><i>O. sativa</b></i> ssp. <b><i> japonica</b></i>. The project began in 1998 and the first high-quality map-based draft sequence was released in December 2002. The consortium members are Japan, USA, China, Taiwan, Korea, India, Thailand, France, Brazil, and the United Kingdom. The sequencing strategy was to organize BAC clones into contigs by FPC. These contigs were placed on a high-density genetic map. From this a minimum tiling path was chosen and the nucleotide sequence of these BACs was determined. PAC clones were used to fill in some gaps. The final sequence represents finished quality sequence that covers 95% of the 389 Mb genome.
Sample: Oryza sativa japonica panicle RNA seq
SAMN02649583 • SRS563567 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 207.5M spots, 41.5G bases, 25.4Gb
Run# of Spots# of BasesSizePublished
SRR1178906207,489,21741.5G25.4Gb2014-03-03

ID:
667030

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