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SRX113665: GSM851605: Chlamydomonas reinhardtii 2137 - Nitrogen deficiency short time course - t=18m
1 ILLUMINA (Illumina Genome Analyzer II) run: 8.8M spots, 1.3G bases, 831.9Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Three acyltransferases and a nitrogen responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas
show Abstracthide Abstract
Three acyltransferases, DGAT1, DGTT1, and PDAT1, are induced by nitrogen starvation and are likely to have a role in TAG accumulation based on their patterns of expression. Each gene also shows increased mRNA abundance in other TAG-accumulating conditions (-S, -P, -Zn, -Fe). Insertional mutants, pdat1-1 and pdat1-2, accumulate 25% less TAG compared to the parent strain, D66+, which demonstrates the relevance of the trans-acylation pathway in Chlamydomonas. The biochemical functions of DGTT1 and PDAT1 were validated by rescue of oleic acid sensitivity and restoration of TAG accumulation in a yeast strain lacking all acyltransferase activity. Time course analysis suggest than an SBP domain transcription factor protein, whose mRNA increases precede that of other genes like DGAT1, is a candidate regulator of the N-deficiency response. An insertional mutant, nrr1-1, accumulates only 50% of the TAG compared to the parental strain in N-starvation conditions and is unaffected by other nutrient stresses, suggesting the operation of multiple signaling pathways leading to stress-induced TAG accumulation. Overall design: Sampling of Chlamydomonas 2137 cultivated in TAP, N-Free TAP or TAP with varying amounts of N.
Sample: Chlamydomonas reinhardtii 2137 - Nitrogen deficiency short time course - t=18m
SAMN00769237 • SRS284493 • All experiments • All runs
Library:
Name: GSM851605: Chlamydomonas reinhardtii 2137 - Nitrogen deficiency short time course - t=18m
Instrument: Illumina Genome Analyzer II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Spot descriptor:
forward76  reverse

Experiment attributes:
GEO Accession: GSM851605
Links:
External link:
Runs: 1 run, 8.8M spots, 1.3G bases, 831.9Mb
Run# of Spots# of BasesSizePublished
SRR3937758,832,4021.3G831.9Mb2013-01-14

ID:
131205

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