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SRX030848: Streptococcus pyogenes_illumina Indexing.
37 ILLUMINA (Illumina Genome Analyzer II) runs: 44.3M spots, 6.4G bases, 2.5Gb downloads

UUID: 84085817-fbc6-4a6a-a8f3-a550fe98ab69
Design: Illumina sequencing of Streptococcus pyogenes MGAS9960
Submitted by: Broad Institute (BI)
Study: Streptococcus pyogenes
show Abstracthide Abstract
GAS (group A Streptococcus) is a Gram-positive bacterium that causes several diseases in humans, including pharyngitis and/or tonsillitis, skin infections (impetigo, erysipelis, and other forms of pyoderma), acute rheumatic fever (ARF), scarlet fever (SF), poststreptococcal glomerulonephritis, a toxic-shock-like syndrome, and necrotizing fasciitis (NF). The overall goal of this project is to provide unique understanding, at the nucleotide level, of the molecular genetic events contributing to epidemics caused by a bacterial pathogen, including antibiotic-resistant strains. The project will exploit the availability of a unique sample of 362 serotype M3 strains of group A Streptococcus recovered during an ongoing study of invasive infections in Ontario, Canada.
Library:
Name: Solexa-20966&Solexa-21520
Instrument: Illumina Genome Analyzer II
Strategy: WGS
Source: GENOMIC
Selection: other
Layout: PAIRED
Spot descriptor:
forward barcode
Group tagBasecalls
tagged_109ACAGGTAT
tagged_110ACAGTTGA
tagged_117ACCAACTG
tagged_214AGGATCTA
tagged_23AACGCATT
tagged_291ATTCCTCT
tagged_309CAACTCTC
tagged_320CAATAGTC
tagged_332CACATCCT
tagged_34AACTTGAC
tagged_352CAGCAAGG
tagged_355CAGCGGTA
tagged_357CAGGAGCC
tagged_367CATAGCGA
tagged_379CCAACATT
tagged_388CCAGAGCT
tagged_38AAGACACT
tagged_3AACAATGG
tagged_504CTACCAGG
tagged_52AAGGATGT
tagged_542CTGTAATC
tagged_564GAAGAAGT
tagged_567GAAGGAAG
tagged_579GACAGTAA
tagged_581GACCAGGA
tagged_583GACCGTTG
tagged_629GCACACGA
tagged_778TAAGCACA
tagged_78AATGTTCT
tagged_818TATCCAGG
tagged_851TCCAGCAA
tagged_861TCCTTGGT
tagged_868TCGCTAGA
tagged_869TCGGAATG
tagged_878TCTGCAAG
tagged_880TCTGGCGA
77  reverse

Experiment attributes: (show all 6 attributes...) (hide...)
analysis_type: WGSWithRef
gssr_ids: 35917.1 35918.1 35919.1 35920.1 35921.1 35922.1 35 (show full text...)(hide...)
35917.1 35918.1 35919.1 35920.1 35921.1 35922.1 35923.1 35924.1 35925.1 35926.1 35927.1 35928.1 35929.1 35930.1 35931.1 35932.1 35933.1 35934.1 35935.1 35936.1 35937.1 35938.1 35939.1 35940.1 35941.1 35942.1 35943.1 35944.1 35945.1 35946.1 35947.1 35948.1 35955.1 35956.1 35957.1 35958.1
lsids: BROAD:SEQUENCING_SAMPLE:35917.1 BROAD:SEQUENCING_S (show full text...)(hide...)
BROAD:SEQUENCING_SAMPLE:35917.1 BROAD:SEQUENCING_SAMPLE:35918.1 BROAD:SEQUENCING_SAMPLE:35919.1 BROAD:SEQUENCING_SAMPLE:35920.1 BROAD:SEQUENCING_SAMPLE:35921.1 BROAD:SEQUENCING_SAMPLE:35922.1 BROAD:SEQUENCING_SAMPLE:35923.1 BROAD:SEQUENCING_SAMPLE:35924.1 BROAD:SEQUENCING_SAMPLE:35925.1 BROAD:SEQUENCING_SAMPLE:35926.1 BROAD:SEQUENCING_SAMPLE:35927.1 BROAD:SEQUENCING_SAMPLE:35928.1 BROAD:SEQUENCING_SAMPLE:35929.1 BROAD:SEQUENCING_SAMPLE:35930.1 BROAD:SEQUENCING_SAMPLE:35931.1 BROAD:SEQUENCING_SAMPLE:35932.1 BROAD:SEQUENCING_SAMPLE:35933.1 BROAD:SEQUENCING_SAMPLE:35934.1 BROAD:SEQUENCING_SAMPLE:35935.1 BROAD:SEQUENCING_SAMPLE:35936.1 BROAD:SEQUENCING_SAMPLE:35937.1 BROAD:SEQUENCING_SAMPLE:35938.1 BROAD:SEQUENCING_SAMPLE:35939.1 BROAD:SEQUENCING_SAMPLE:35940.1 BROAD:SEQUENCING_SAMPLE:35941.1 BROAD:SEQUENCING_SAMPLE:35942.1 BROAD:SEQUENCING_SAMPLE:35943.1 BROAD:SEQUENCING_SAMPLE:35944.1 BROAD:SEQUENCING_SAMPLE:35945.1 BROAD:SEQUENCING_SAMPLE:35946.1 BROAD:SEQUENCING_SAMPLE:35947.1 BROAD:SEQUENCING_SAMPLE:35948.1 BROAD:SEQUENCING_SAMPLE:35955.1 BROAD:SEQUENCING_SAMPLE:35956.1 BROAD:SEQUENCING_SAMPLE:35957.1 BROAD:SEQUENCING_SAMPLE:35958.1
material_type: Genomic DNA
projects: G3043 G3044 G3045 G3046 G3047 G3048 G3049 G3050 G3 (show full text...)(hide...)
G3043 G3044 G3045 G3046 G3047 G3048 G3049 G3050 G3051 G3052 G3053 G3054 G3055 G3056 G3057 G3058 G3059 G3060 G3061 G3062 G3063 G3064 G3065 G3066 G3067 G3068 G3069 G3070 G3071 G3072 G3073 G3074 G3075 G3076 G3077 G3078
work_request: 21009
Pipeline: show...hide...
NameStepProgramVersion
2010-03-10 18:33:32.0Rig Software2.6.25
base caller2010-03-10 18:33:19.0GAPipeline1.6.0a16
Runs: 37 runs, 44.3M spots, 6.4G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
SRR0576661,144,210164.8M67.5Mb2010-11-15
SRR0576671,135,083163.5M67Mb2010-11-12
SRR0576681,163,169167.5M68.3Mb2010-11-12
SRR0576691,117,061160.9M65.8Mb2010-11-12
SRR0576701,161,041167.2M68.2Mb2010-11-12
SRR0576711,251,587180.2M74.8Mb2010-11-12
SRR0576721,219,352175.6M72.4Mb2010-11-12
SRR0576731,228,298176.9M72.4Mb2010-11-12
SRR0576741,205,001173.5M70.9Mb2010-11-12
SRR0576751,168,396168.2M68.8Mb2010-11-12
SRR0576761,200,173172.8M71Mb2010-11-12
SRR0576771,097,261158M66.2Mb2010-11-12
SRR0576781,123,071161.7M67Mb2010-11-12
SRR0576791,151,595165.8M68.2Mb2010-11-12
SRR0576801,147,768165.3M67.6Mb2010-11-12
There are 22 omitted runs. See all runs in Run Selector.

#Member# of Spots# of Bases
1SRS0248872.6M367.4M
2SRS066102 : tagged_117_ACCAACTG1.2M167.5M
3SRS066103 : tagged_109_ACAGGTAT1.1M164.8M
4SRS066104 : tagged_367_CATAGCGA1.2M165.8M
5SRS066105 : tagged_379_CCAACATT1.1M165.3M
6SRS066106 : tagged_880_TCTGGCGA1.2M172.1M
7SRS066107 : tagged_818_TATCCAGG1.2M179.8M
8SRS066108 : tagged_214_AGGATCTA1.1M160.9M
9SRS066109 : tagged_110_ACAGTTGA1.1M163.5M
10SRS066110 : tagged_388_CCAGAGCT1.2M169.1M
11SRS066111 : tagged_320_CAATAGTC1.2M176.9M
12SRS066112 : tagged_3_AACAATGG1.2M173.3M
13SRS066113 : tagged_352_CAGCAAGG1.2M172.8M
14SRS066114 : tagged_291_ATTCCTCT1.3M180.2M
15SRS066115 : tagged_579_GACAGTAA1.1M163.5M
16SRS066116 : tagged_34_AACTTGAC1.2M168.2M
17SRS066117 : tagged_23_AACGCATT1.2M167.2M
18SRS066118 : tagged_583_GACCGTTG1.1M159.1M
19SRS066119 : tagged_861_TCCTTGGT1.1M164.4M
20SRS066120 : tagged_878_TCTGCAAG1.1M158.9M
21SRS066121 : tagged_564_GAAGAAGT1.2M173.4M
22SRS066122 : tagged_567_GAAGGAAG1.3M184M
23SRS066123 : tagged_851_TCCAGCAA1.1M153.6M
24SRS066124 : tagged_868_TCGCTAGA1.1M155.8M
25SRS066125 : tagged_52_AAGGATGT1.1M155.3M
26SRS066126 : tagged_78_AATGTTCT1.1M155.7M
27SRS066127 : tagged_357_CAGGAGCC1.1M161.7M
28SRS066128 : tagged_355_CAGCGGTA1.1M158M
29SRS066129 : tagged_629_GCACACGA1.2M166M
30SRS066130 : tagged_581_GACCAGGA1.1M161.3M
31SRS066131 : tagged_332_CACATCCT1.2M173.5M
32SRS066132 : tagged_309_CAACTCTC1.2M175.6M
33SRS066133 : tagged_504_CTACCAGG1.2M170.2M
34SRS066134 : tagged_542_CTGTAATC1.2M169.4M
35SRS066135 : tagged_869_TCGGAATG1.2M168.1M
36SRS066136 : tagged_778_TAAGCACA1.2M172.8M
37SRS066137 : tagged_38_AAGACACT1.1M161.2M
38 : defaultn/an/a

ID:
37558

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