U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX022627: Whole Genome Sequencing of Candidatus Nitrosarchaeum limnium BG20
1 LS454 (454 GS FLX Titanium) run: 640,872 spots, 339.5M bases, 754.4Mb downloads

Design: Marine Microbial Sequencing Project
Submitted by: J. Craig Venter Institute
Study: Candidatus Nitrosarchaeum limnium BG20 Genome sequencing and assembly
show Abstracthide Abstract
Collected from Surficial sediments beneath a 12-ft water column from Coastal/estuarine sediments (California). Marine â Group 1â Crenarchaeota are among the most abundant organisms on Earth, yet for the last 15 years our understanding of their physiology and biogeochemical function has remained almost entirely speculative, largely because of our inability to cultivate them. However, a combination of metagenomic, molecular, and cultivation studies have recently revealed that a considerable fraction of mesophilic Crenarchaeota may be chemoautotrophic ammonia-oxidizers. Presently, there is only one described ammonia-oxidizing archaeon (AOA) in pure culture, Nitrosopumilus maritimus, isolated from a tropical marine aquarium (Könneke et al., 2005). Thus, it is imperative to obtain additional cultures and genome sequences of â??environmentally-relevantâ?? AOA from marine and estuarine environments, where these organisms likely play a critical role in nitrification. Strain BG20 was isolated from coastal/estuarine sediments and, interestingly, the 16S rRNA sequence of this organism is only 96% identical to that of N. maritimus, suggesting that it likely represents a novel species of mesophilic Crenarchaeota.
Sample: Candidatus Nitrosoarchaeum limnia BG20
SAMN00016663 • SRS084641 • All experiments • All runs
Library:
Name: M222-4F-01-556
Instrument: 454 GS FLX Titanium
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
         forward

Runs: 1 run, 640,872 spots, 339.5M bases, 754.4Mb
Run# of Spots# of BasesSizePublished
SRR058916640,872339.5M754.4Mb2010-06-30

ID:
24493

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...