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SRX342931: Size-fractionated Metagenomics - 16S Amplicons - 5m - 1 (0.22-1.6micron)
1 LS454 (454 GS FLX Titanium) run: 24,063 spots, 12.7M bases, 28.1Mb downloads

Submitted by: Georgia Institute of Technology
Study: Metagenomic Analysis of Size-fractionated Picoplankton in a Marine Oxygen Minimum Zone
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This study explores the genetic and metabolic diversity of microorganisms (Bacteria and Archaea) in a marine oxygen minimum zone (OMZ) off of northern Chile. Microbial metabolism in OMZs contributes to large scale biogeochemical cycles, notably the marine nitrogen cycle. However, the identity of the microorgansims mediating these cycles is largely unexplored. The ecological factors controlling the distribution and activity of OMZ microbes are also largely unknown. Metagenomes generated in this study provide knowledge of the diversity and function of OMZ microbes across depth gradients. Metagenomes were also collected from distinct microbial size fractions, enabling a comparison of free-living and particle-attached microbial communities. This comparison helps identify key functional properties distinguishing microbial life history strategies in the ocean.
Sample: MIMS Environmental/Metagenome sample from Marine Bacteria and Archaea
SAMN02339399 • SRS475519 • All experiments • All runs
Library:
Name: 16SrRNA_V1-V3_Amplicon_5m_0.22-1.6micron_1
Instrument: 454 GS FLX Titanium
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 24,063 spots, 12.7M bases, 28.1Mb
Run# of Spots# of BasesSizePublished
SRR96185824,06312.7M28.1Mb2013-09-03

ID:
485391

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