Identification of lignin genes and regulatory sequences involved in s... - SRA

SRX039675: Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
1 ILLUMINA (Illumina Genome Analyzer II) run: 13.6M spots, 1.4G bases, 895.1Mb downloads

Design: Ribosomal RNA was depleted from total RNA before cDNA synthesis using Invitrogen Ribominus Kit. The sequencing library was constructed following Illumina RNA-Seq protocols.

Submitted by: UNIVERSITI KEBANGSAAN MALAYSIA

Study: Transcriptome Sequencing of Acacia auriculiformis and Acacia mangium

• SRP005506 • All experiments • All runs

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Acacia auriculiformis x Acacia mangium hybrids are commercially important trees for the timber and pulp industry in Southeast Asia. Increasing pulp yield while reducing pulping costs are major objectives of tree breeding programs. The general monolignol biosynthesis and wood-related pathways are well-characterized but genes in these pathways are poorly characterized in Acacia hybrids. RNA-seq on short-read platforms for A. auriculiformis and A. mangium is a rapid approach for obtaining comprehensive transcriptomic data and to discover informative sequence variants.

Sample: Acacia auriculiformis AA6

SAMN00199232 • SRS160846 • All experiments • All runs

Organism: Acacia auriculiformis

Library:

Name: Acacia auriculiformis

Instrument: Illumina Genome Analyzer II

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Spot descriptor:

1 forward52 reverse

Runs: 1 run, 13.6M spots, 1.4G bases, 895.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR098315	13,648,154	1.4G	895.1Mb	2011-07-05

ID:: 47114

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