My Bibliography

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Schlesinger D, Diamant N, Raghu A, Reinertsen E, Young K, Batra P, Pomerantsev E, Stultz CM. A Deep Learning Model for Inferring Elevated Pulmonary Capillary Wedge Pressures From the 12-Lead Electrocardiogram. Jacc. Advances. 2022 March; 1(1):1.

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Diamant N, Reinertsen E, Song S, Aguirre AD, Stultz CM, Batra P. Patient contrastive learning: A performant, expressive, and practical approach to electrocardiogram modeling. PLoS Comput Biol. 2022 Feb;18(2):e1009862. doi: 10.1371/journal.pcbi.1009862. eCollection 2022 Feb. PubMed PMID: 35157695; PubMed Central PMCID: PMC8880931.

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Morales MA, van den Boomen M, Nguyen C, Kalpathy-Cramer J, Rosen BR, Stultz CM, Izquierdo-Garcia D, Catana C. DeepStrain: A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics. Front Cardiovasc Med. 2021;8:730316. doi: 10.3389/fcvm.2021.730316. eCollection 2021. PubMed PMID: 34540923; PubMed Central PMCID: PMC8446607.

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Myers PD, Ng K, Severson K, Kartoun U, Dai W, Huang W, Anderson FA, Stultz CM. Identifying unreliable predictions in clinical risk models. NPJ Digit Med. 2020;3:8. doi: 10.1038/s41746-019-0209-7. eCollection 2020. PubMed PMID: 31993506; PubMed Central PMCID: PMC6978376.

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Myers PD, Huang W, Anderson F, Stultz CM. Choosing Clinical Variables for Risk Stratification Post-Acute Coronary Syndrome. Sci Rep. 2019 Oct 10;9(1):14631. doi: 10.1038/s41598-019-50933-3. PubMed PMID: 31601916; PubMed Central PMCID: PMC6787006.

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Bowman SEJ, Backman LRF, Bjork RE, Andorfer MC, Yori S, Caruso A, Stultz CM, Drennan CL. Solution structure and biochemical characterization of a spare part protein that restores activity to an oxygen-damaged glycyl radical enzyme. J Biol Inorg Chem. 2019 Sep;24(6):817-829. doi: 10.1007/s00775-019-01681-2. Epub 2019 Jun 27. PubMed PMID: 31250200; PubMed Central PMCID: PMC6754787.

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Stultz CM. The Advent of Clinically Useful Deep Learning. JACC Clin Electrophysiol. 2019 May;5(5):587-589. doi: 10.1016/j.jacep.2019.03.006. PubMed PMID: 31122380.

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Myers PD, Scirica BM, Stultz CM. Machine Learning Improves Risk Stratification After Acute Coronary Syndrome. Sci Rep. 2017 Oct 4;7(1):12692. doi: 10.1038/s41598-017-12951-x. PubMed PMID: 28978948; PubMed Central PMCID: PMC5627253.

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Stultz CM. Computational Chemistry and Machine Learning in Molecular Medicine and Healthcare: Applications from the Molecule to the Patient. John’s Hopkins Institute for Computational Medicine. 2017 May; Baltimore, Maryland, U.S.A..

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Burger VM, Vandervelde A, Hendrix J, Konijnenberg A, Sobott F, Loris R, Stultz CM. Hidden States within Disordered Regions of the CcdA Antitoxin Protein. J Am Chem Soc. 2017 Feb 22;139(7):2693-2701. doi: 10.1021/jacs.6b11450. Epub 2017 Feb 8. PubMed PMID: 28124913.

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Liu Y, Scirica BM, Stultz CM, Guttag JV. Beatquency domain and machine learning improve prediction of cardiovascular death after acute coronary syndrome. Sci Rep. 2016 Oct 6;6:34540. doi: 10.1038/srep34540. PubMed PMID: 27708350; PubMed Central PMCID: PMC5052591.

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Stultz C. Characterizing Disorder to Order transitions in Intrinsically Disordered Proteins. American Chemical Society Annual Meeting. 2016 August; Philadelphia, Pennsylvania, U.S.A..

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Ziegler Z, Schmidt M, Gurry T, Burger V, Stultz CM. Mollack: a web server for the automated creation of conformational ensembles for intrinsically disordered proteins. Bioinformatics. 2016 Aug 15;32(16):2545-7. doi: 10.1093/bioinformatics/btw200. Epub 2016 Apr 19. PubMed PMID: 27153636.

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Burger VM, Arenas DJ, Stultz CM. A Structure-free Method for Quantifying Conformational Flexibility in proteins. Sci Rep. 2016 Jun 30;6:29040. doi: 10.1038/srep29040. PubMed PMID: 27358108; PubMed Central PMCID: PMC4928179.

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A method and apparatus for beat-space frequency domain prediction of cardiovascular death after acute coronary events. USA 9,295,397. 2016 March.

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Burger VM, Nolasco DO, Stultz CM. Expanding the Range of Protein Function at the Far End of the Order-Structure Continuum. J Biol Chem. 2016 Mar 25;291(13):6706-13. doi: 10.1074/jbc.R115.692590. Epub 2016 Feb 5. Review. PubMed PMID: 26851282; PubMed Central PMCID: PMC4807258.

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Stultz C. Computational Chemistry and Machine Learning in Cardiovascular Medicine: Application to Acute Coronary Syndromes and Patient Risk Stratification Post-ACS. Cardiovascular Research Center Seminar. 2016 March; Charlottesville, VA, USA.

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Gurry T, Fisher CK, Schmidt M, Stultz CM. Analyzing Ensembles of Amyloid Proteins Using Bayesian Statistics. Methods Mol Biol. 2016;1345:269-80. doi: 10.1007/978-1-4939-2978-8_17. PubMed PMID: 26453218.

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Stultz C. Characterizing Disorder-to-Order Conformational Transitions in Intrinsically Disordered Proteins. Physical Chemistry Seminar. 2015 September; Waltham, MA, USA.

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Stultz C. Novel Computational Approaches for the Study and Treatment of Neurodegenerative Disorders. Future University Individuals Program. 2015 August; Lisbon, Portugal.

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Stultz C. A rose by any other name would smell as sweet: What is a cardiac biomarker?. GE Global Research, Niskayuna, NY. 2015 April.

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Stultz C. The Aggregation Mechanism of Amyloidogenic Proteins involved in Neurodegenerative Disorders. ”, The American Society for Biochemistry and Molecular Biology Annual Meeting, Boston MA.. 2015 March.

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Stultz C. Insights into the Aggregation Mechanism of Amyloidogenic Proteins involved in Neurodegenerative Disorders. The 249th National American Chemical Society Meeting, Denver Colorado. 2015 March.

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DaSilva LC, Gurry T, Stultz CM. Toward a consensus in protein structure nomenclature. Intrinsically Disord Proteins. 2014;2(1):e970902. doi: 10.4161/idp.29700. eCollection 2014. PubMed PMID: 28232882; PubMed Central PMCID: PMC5314908.

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Gurry T, Stultz CM. Mechanism of amyloid-β fibril elongation. Biochemistry. 2014 Nov 11;53(44):6981-91. doi: 10.1021/bi500695g. Epub 2014 Oct 31. PubMed PMID: 25330398.

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Zhong C, Gurry T, Cheng AA, Downey J, Deng Z, Stultz CM, Lu TK. Strong underwater adhesives made by self-assembling multi-protein nanofibres. Nat Nanotechnol. 2014 Oct;9(10):858-66. doi: 10.1038/nnano.2014.199. Epub 2014 Sep 21. PubMed PMID: 25240674; PubMed Central PMCID: PMC4191913.

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Stultz C. Modeling Intrinsically Disordered Proteins: Application to Amyloid Beta. Martin Karplus Celebration Symposium (in celebration of Martin Karplus’ 2013 Nobel prize in Chemistry), San Francisco California. 2014 October.

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Liu Y, Syed Z, Scirica BM, Morrow DA, Guttag JV, Stultz CM. ECG morphological variability in beat space for risk stratification after acute coronary syndrome. J Am Heart Assoc. 2014 Jun 24;3(3):e000981. doi: 10.1161/JAHA.114.000981. PubMed PMID: 24963105; PubMed Central PMCID: PMC4309066.

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Stultz C. Research in the Computational Biophysics Group. Stanford University Bioengineering Seminar, Stanford California. 2014 January.

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DaSilva L, Gurry T, Stultz C. Towards a Consensus in Protein Structure Nome. Intrinsically disordered proteins. 2014; 2(1):1-2.

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Burger V, Gurry T, Stultz C. Intrinsically Disordered Proteins: Where Computation Meets Experiment. Polymers. 2014; 6(10):2684-2719.

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Stultz C. The Mechanism of Aβ Fiber Elongation. The 6th International Conference on Bioinformatics and Biomedical Engineering, Beijing, China (Plenary Lecture). 2013 September.

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Stultz C. The Mechanism of Aβ Fiber Elongation. Cold Spring Harber Asia Conference: Frontiers in Bioinformatics and Computational Biology, Suzhou, China. 2013 September.

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Gee EPS, Yüksel D, Stultz CM, Ingber DE. SLLISWD sequence in the 10FNIII domain initiates fibronectin fibrillogenesis. J Biol Chem. 2013 Jul 19;288(29):21329-21340. doi: 10.1074/jbc.M113.462077. Epub 2013 Jun 5. PubMed PMID: 23740248; PubMed Central PMCID: PMC3774401.

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Lu KG, Stultz CM. Insight into the degradation of type-I collagen fibrils by MMP-8. J Mol Biol. 2013 May 27;425(10):1815-25. doi: 10.1016/j.jmb.2013.02.002. Epub 2013 Feb 8. PubMed PMID: 23399546.

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Stultz C. Novel Computational Tools for Risk Stratifying Patients Post-ACS. West Roxbury VA Cardiology Grand Rounds, West Roxbury, MA.. 2013 May.

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Fisher CK, Ullman O, Stultz CM. Comparative studies of disordered proteins with similar sequences: application to Aβ40 and Aβ42. Biophys J. 2013 Apr 2;104(7):1546-55. doi: 10.1016/j.bpj.2013.02.023. PubMed PMID: 23561531; PubMed Central PMCID: PMC3617440.

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Gurry T, Ullman O, Fisher CK, Perovic I, Pochapsky T, Stultz CM. The dynamic structure of α-synuclein multimers. J Am Chem Soc. 2013 Mar 13;135(10):3865-72. doi: 10.1021/ja310518p. Epub 2013 Feb 27. PubMed PMID: 23398399.

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Stultz C. Understanding Human Disease with the Aid of Computers. ”. Draper Laboratory, Cambridge, MA.. 2013 February.

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Stultz C. Modeling Intrinsically Disordered Proteins. Wellesley College Chemistry Seminar, Wellesley, MA.. 2013 February.

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Stultz C. The Role of Intrinsic Disorder in Modulating Collagen Metabolism. NIH Biochemistry and Biophysics Seminar, Bethesda Maryland.. 2013 January.

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Liu JS, Schubert CR, Fu X, Fourniol FJ, Jaiswal JK, Houdusse A, Stultz CM, Moores CA, Walsh CA. Molecular basis for specific regulation of neuronal kinesin-3 motors by doublecortin family proteins. Mol Cell. 2012 Sep 14;47(5):707-21. doi: 10.1016/j.molcel.2012.06.025. Epub 2012 Aug 1. PubMed PMID: 22857951; PubMed Central PMCID: PMC3549492.

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Stultz C. Biology and Mathematics – A Marriage Made in Heaven or Hell. Mu Alpha Theta, National High School and Two Year College Mathematics Honor Society, Mathematics National Convention, Boston, MA.. 2012 July.

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Stultz C. Modeling Disordered Proteins: Are Structural Models of the Unfolded State Correct?. Computational Biophysics to Systems Biology Workshop (CBSB12), Knoxville, Tennessee. 2012 June.

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Walker S, Ullman O, Stultz CM. Using intramolecular disulfide bonds in tau protein to deduce structural features of aggregation-resistant conformations. J Biol Chem. 2012 Mar 16;287(12):9591-600. doi: 10.1074/jbc.M111.336107. Epub 2012 Jan 30. PubMed PMID: 22291015; PubMed Central PMCID: PMC3308815.

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Stultz C. Designing Drugs for Intrinsically Disordered Proteins: Challenges and Opportunities. OpenEyeCUP XIII Conference 2012, Santa Fe, New Mexico. 2012 March.

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Stultz C. Efficient Construction of Ensembles for Disordered Proteins. Pacific Symposium on Biocomputing 2012, Kona Hawaii. 2012 January.

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Fisher CK, Ullman O, Stultz CM. Efficient construction of disordered protein ensembles in a Bayesian framework with optimal selection of conformations. Pac Symp Biocomput. 2012;:82-93. PubMed PMID: 22174265; PubMed Central PMCID: PMC3422750.

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Ullman O, Fisher CK, Stultz CM. Explaining the structural plasticity of α-synuclein. J Am Chem Soc. 2011 Dec 7;133(48):19536-46. doi: 10.1021/ja208657z. Epub 2011 Nov 14. PubMed PMID: 22029383; PubMed Central PMCID: PMC3227348.

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Stultz C. Is Collagen a Disordered Protein?. Vanderbilt University Matrix Biology Seminar. 2011 October.