My Bibliography

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Parobek C, Zemet R, Shanahan M, Burnett B, Mizerik E, Rosenfeld J, Vossaert L, Clark S, Hunter J, Lalani S. Clinical exome sequencing uncovers genetic disorders in neonates with suspected hypoxic–ischemic encephalopathy: A retrospective analysis. Clinical Genetics. 2024 March; :-. doi: 10.1111/cge.14522.

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Parobek C, Has P, Lorenzi P, Clark M, Lewkowitz A, Russo M. Inconsistent use of alpha-fetoprotein as a screen for fetal anomalies. American Journal of Obstetrics & Gynecology MFM. 2023 October; 5(10):101133-. doi: 10.1016/j.ajogmf.2023.101133.

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Parobek CM, Thorsen MM, Has P, Lorenzi P, Clark MA, Russo ML, Lewkowitz AK. Video education about genetic privacy and patient perspectives about sharing prenatal genetic data: a randomized trial. Am J Obstet Gynecol. 2022 Jul;227(1):87.e1-87.e13. doi: 10.1016/j.ajog.2022.03.047. Epub 2022 Mar 26. PubMed PMID: 35351406; PubMed Central PMCID: PMC9339213.

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Parobek C, Thorsen M, Has P, Lorenzi P, Clark M, Russo M, Lewkowitz A. Video education about genetic privacy and patient perspectives about sharing prenatal genetic data: a randomized trial. American Journal of Obstetrics and Gynecology. 2022 July; 227(1):87.e1-87.e13. doi: 10.1016/j.ajog.2022.03.047.

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Bowman NM, Balasubramanian S, Gilman RH, Parobek C, Calderon M, Waltmann A, Messenger LA, Sanchez L, Bern C, Juliano JJ. Deep Sequencing to Detect Diversity of Trypanosoma cruzi Infection in Patients Coinfected With Human Immunodeficiency Virus and Chagas Disease. J Infect Dis. 2022 Jan 18;225(2):243-247. doi: 10.1093/infdis/jiab350. PubMed PMID: 34240175; PubMed Central PMCID: PMC8764271.

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Parobek CM, Has P, Lorenzi P, Russo ML, Clark MA, Lewkowitz AK. What test did I have? Patient uncertainty about prenatal genetic screening. Am J Obstet Gynecol. 2021 Sep;225(3):341-342. doi: 10.1016/j.ajog.2021.05.030. Epub 2021 May 27. PubMed PMID: 34051169.

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Parobek CM, Russo ML, Lewkowitz AK. Privacy practices using genetic data from cell-free DNA aneuploidy screening. Genet Med. 2021 Sep;23(9):1746-1752. doi: 10.1038/s41436-021-01205-x. Epub 2021 May 19. PubMed PMID: 34012070.

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Parobek C, Has P, Lorenzi P, Russo M, Clark M, Lewkowitz A. What test did I have? Patient uncertainty about prenatal genetic screening. American Journal of Obstetrics and Gynecology. 2021 September; 225(3):341-342. doi: 10.1016/j.ajog.2021.05.030.

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Parobek C, Russo M, Lewkowitz A. Privacy practices using genetic data from cell-free DNA aneuploidy screening. Genetics in Medicine. 2021 September; 23(9):1746-1752. doi: 10.1038/s41436-021-01205-x.

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Parobek CM, Russo ML, Lewkowitz AK. Privacy Risks in Prenatal Aneuploidy and Carrier Screening: What Obstetricians and Their Patients Need to Know. Obstet Gynecol. 2021 Jun 1;137(6):1074-1079. doi: 10.1097/AOG.0000000000004387. PubMed PMID: 33957653.

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Balasubramanian S, Rahman RS, Lon C, Parobek C, Ubalee R, Hathaway N, Kuntawunginn W, My M, Vy D, Saxe J, Lanteri C, Lin FC, Spring M, Meshnick SR, Juliano JJ, Saunders DL, Lin JT. Efficient Transmission of Mixed Plasmodium falciparum/vivax Infections From Humans to Mosquitoes. J Infect Dis. 2020 Jan 14;221(3):428-437. doi: 10.1093/infdis/jiz388. PubMed PMID: 31549156; PubMed Central PMCID: PMC7184918.

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Sá JM, Kaslow SR, Moraes Barros RR, Brazeau NF, Parobek CM, Tao D, Salzman RE, Gibson TJ, Velmurugan S, Krause MA, Melendez-Muniz V, Kite WA, Han PK, Eastman RT, Kim A, Kessler EG, Abebe Y, James ER, Chakravarty S, Orr-Gonzalez S, Lambert LE, Engels T, Thomas ML, Fasinu PS, Serre D, Gwadz RW, Walker L, DeConti DK, Mu J, Bailey JA, Sim BKL, Hoffman SL, Fay MP, Dinglasan RR, Juliano JJ, Wellems TE. Plasmodium vivax chloroquine resistance links to pvcrt transcription in a genetic cross. Nat Commun. 2019 Sep 20;10(1):4300. doi: 10.1038/s41467-019-12256-9. PubMed PMID: 31541097; PubMed Central PMCID: PMC6754410.

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Hathaway NJ, Parobek CM, Juliano JJ, Bailey JA. SeekDeep: single-base resolution de novo clustering for amplicon deep sequencing. Nucleic Acids Res. 2018 Feb 28;46(4):e21. doi: 10.1093/nar/gkx1201. PubMed PMID: 29202193; PubMed Central PMCID: PMC5829576.

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Waltmann A, Patel JC, Thwai KL, Hathaway NJ, Parobek CM, Massougbodji A, Fievet N, Bailey JA, Deloron P, Juliano JJ, Ndam NT, Meshnick SR. Matched Placental and Circulating Plasmodium falciparum Parasites are Genetically Homologous at the var2csa ID1-DBL2X Locus by Deep Sequencing. Am J Trop Med Hyg. 2018 Jan;98(1):77-82. doi: 10.4269/ajtmh.17-0529. PubMed PMID: 29342401; PubMed Central PMCID: PMC5928730.

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Agrawal S, Moser KA, Morton L, Cummings MP, Parihar A, Dwivedi A, Shetty AC, Drabek EF, Jacob CG, Henrich PP, Parobek CM, Jongsakul K, Huy R, Spring MD, Lanteri CA, Chaorattanakawee S, Lon C, Fukuda MM, Saunders DL, Fidock DA, Lin JT, Juliano JJ, Plowe CV, Silva JC, Takala-Harrison S. Association of a Novel Mutation in the Plasmodium falciparum Chloroquine Resistance Transporter With Decreased Piperaquine Sensitivity. J Infect Dis. 2017 Aug 15;216(4):468-476. doi: 10.1093/infdis/jix334. PubMed PMID: 28931241; PubMed Central PMCID: PMC5853219.

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Patel JC, Hathaway NJ, Parobek CM, Thwai KL, Madanitsa M, Khairallah C, Kalilani-Phiri L, Mwapasa V, Massougbodji A, Fievet N, Bailey JA, Ter Kuile FO, Deloron P, Engel SM, Taylor SM, Juliano JJ, Tuikue Ndam N, Meshnick SR. Increased risk of low birth weight in women with placental malaria associated with P. falciparum VAR2CSA clade. Sci Rep. 2017 Aug 11;7(1):7768. doi: 10.1038/s41598-017-04737-y. PubMed PMID: 28801627; PubMed Central PMCID: PMC5554196.

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Kanamori H, Parobek CM, Juliano JJ, Johnson JR, Johnston BD, Johnson TJ, Weber DJ, Rutala WA, Anderson DJ. Genomic Analysis of Multidrug-Resistant Escherichia coli from North Carolina Community Hospitals: Ongoing Circulation of CTX-M-Producing ST131-H30Rx and ST131-H30R1 Strains. Antimicrob Agents Chemother. 2017 Aug;61(8). doi: 10.1128/AAC.00912-17. Print 2017 Aug. PubMed PMID: 28584139; PubMed Central PMCID: PMC5527606.

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Parobek CM, Parr JB, Brazeau NF, Lon C, Chaorattanakawee S, Gosi P, Barnett EJ, Norris LD, Meshnick SR, Spring MD, Lanteri CA, Bailey JA, Saunders DL, Lin JT, Juliano JJ. Partner-Drug Resistance and Population Substructuring of Artemisinin-Resistant Plasmodium falciparum in Cambodia. Genome Biol Evol. 2017 Jun 1;9(6):1673-1686. doi: 10.1093/gbe/evx126. PubMed PMID: 28854635; PubMed Central PMCID: PMC5522704.

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Kanamori H, Parobek CM, Juliano JJ, van Duin D, Cairns BA, Weber DJ, Rutala WA. A Prolonged Outbreak of KPC-3-Producing Enterobacter cloacae and Klebsiella pneumoniae Driven by Multiple Mechanisms of Resistance Transmission at a Large Academic Burn Center. Antimicrob Agents Chemother. 2017 Feb;61(2). doi: 10.1128/AAC.01516-16. Print 2017 Feb. PubMed PMID: 27919898; PubMed Central PMCID: PMC5278681.

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Parobek CM, Archer FI, DePrenger-Levin ME, Hoban SM, Liggins L, Strand AE. skelesim: an extensible, general framework for population genetic simulation in R. Mol Ecol Resour. 2017 Jan;17(1):101-109. doi: 10.1111/1755-0998.12607. Epub 2016 Nov 16. PubMed PMID: 27736016; PubMed Central PMCID: PMC5161633.

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Kanamori H, Johnson T, Parobek C, Juliano J, Johnson J, Johnston B, Weber D, Rutala W, Anderson D. Comparative Phylogenomic Analysis of Escherichia coli ST131 Isolates and IncF-type Plasmids from North Carolina Community Hospitals and Other Regions of the United States. Open forum infectious diseases. 2017 January.

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Parobek CM, Lin JT, Saunders DL, Barnett EJ, Lon C, Lanteri CA, Balasubramanian S, Brazeau N, DeConti DK, Garba DL, Meshnick SR, Spring MD, Chuor CM, Bailey JA, Juliano JJ. Selective sweep suggests transcriptional regulation may underlie Plasmodium vivax resilience to malaria control measures in Cambodia. Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):E8096-E8105. doi: 10.1073/pnas.1608828113. Epub 2016 Nov 28. PubMed PMID: 27911780; PubMed Central PMCID: PMC5167194.

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Brazeau NF, Hathaway N, Parobek CM, Lin JT, Bailey JA, Lon C, Saunders DL, Juliano JJ. Longitudinal Pooled Deep Sequencing of the Plasmodium vivax K12 Kelch Gene in Cambodia Reveals a Lack of Selection by Artemisinin. Am J Trop Med Hyg. 2016 Dec 7;95(6):1409-1412. doi: 10.4269/ajtmh.16-0566. Epub 2016 Oct 31. PubMed PMID: 27799638; PubMed Central PMCID: PMC5154458.

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Parobek C, Archer F, DePrenger‐Levin M, Hoban S, Liggins L, Strand A. <scp>skelesim</scp> : an extensible, general framework for population genetic simulation in R. Molecular Ecology Resources. 2016 November; 17(1):101-109. doi: 10.1111/1755-0998.12607.

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Lin JT, Ubalee R, Lon C, Balasubramanian S, Kuntawunginn W, Rahman R, Saingam P, Heng TK, Vy D, San S, Nuom S, Burkly H, Chanarat N, Ponsa C, Levitz L, Parobek C, Chuor CM, Somethy S, Spring M, Lanteri C, Gosi P, Meshnick SR, Saunders DL. Microscopic Plasmodium falciparum Gametocytemia and Infectivity to Mosquitoes in Cambodia. J Infect Dis. 2016 May 1;213(9):1491-4. doi: 10.1093/infdis/jiv599. Epub 2015 Dec 13. PubMed PMID: 26667316; PubMed Central PMCID: PMC4813737.

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Juliano JJ, Parobek CM, Brazeau NF, Ngasala B, Randrianarivelojosia M, Lon C, Mwandagalirwa K, Tshefu A, Dhar R, Das BK, Hoffman I, Martinson F, Mårtensson A, Saunders DL, Kumar N, Meshnick SR. Pooled Amplicon Deep Sequencing of Candidate Plasmodium falciparum Transmission-Blocking Vaccine Antigens. Am J Trop Med Hyg. 2016 Jan;94(1):143-6. doi: 10.4269/ajtmh.15-0571. Epub 2015 Oct 26. PubMed PMID: 26503281; PubMed Central PMCID: PMC4710419.

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Kanamori H, Parobek CM, Weber DJ, van Duin D, Rutala WA, Cairns BA, Juliano JJ. Next-Generation Sequencing and Comparative Analysis of Sequential Outbreaks Caused by Multidrug-Resistant Acinetobacter baumannii at a Large Academic Burn Center. Antimicrob Agents Chemother. 2015 Dec 7;60(3):1249-57. doi: 10.1128/AAC.02014-15. PubMed PMID: 26643351; PubMed Central PMCID: PMC4775949.

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Van Treuren W, Ponnusamy L, Brinkerhoff RJ, Gonzalez A, Parobek CM, Juliano JJ, Andreadis TG, Falco RC, Ziegler LB, Hathaway N, Keeler C, Emch M, Bailey JA, Roe RM, Apperson CS, Knight R, Meshnick SR. Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex. Appl Environ Microbiol. 2015 Sep;81(18):6200-9. doi: 10.1128/AEM.01562-15. Epub 2015 Jul 6. PubMed PMID: 26150449; PubMed Central PMCID: PMC4542252.

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Juliano JJ, Barnett E, Parobek CM, Taylor SM, Meshnick SR, Stone S, Chang E, Fong S, Huang L. Use of Oropharyngeal Washes to Diagnose and Genotype Pneumocystis jirovecii. Open Forum Infect Dis. 2015 Sep;2(3):ofv080. doi: 10.1093/ofid/ofv080. eCollection 2015 Sep. PubMed PMID: 26180832; PubMed Central PMCID: PMC4498285.

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Taylor SM, Parobek CM, DeConti DK, Kayentao K, Coulibaly SO, Greenwood BM, Tagbor H, Williams J, Bojang K, Njie F, Desai M, Kariuki S, Gutman J, Mathanga DP, Mårtensson A, Ngasala B, Conrad MD, Rosenthal PJ, Tshefu AK, Moormann AM, Vulule JM, Doumbo OK, Ter Kuile FO, Meshnick SR, Bailey JA, Juliano JJ. Absence of putative artemisinin resistance mutations among Plasmodium falciparum in Sub-Saharan Africa: a molecular epidemiologic study. J Infect Dis. 2015 Mar 1;211(5):680-8. doi: 10.1093/infdis/jiu467. Epub 2014 Sep 1. PubMed PMID: 25180240; PubMed Central PMCID: PMC4402372.

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Patel JC, Taylor SM, Juliao PC, Parobek CM, Janko M, Gonzalez LD, Ortiz L, Padilla N, Tshefu AK, Emch M, Udhayakumar V, Lindblade K, Meshnick SR. Genetic Evidence of Importation of Drug-Resistant Plasmodium falciparum to Guatemala from the Democratic Republic of the Congo. Emerg Infect Dis. 2014 Jun;20(6):932-40. doi: 10.3201/eid2006.131204. PubMed PMID: 24856348; PubMed Central PMCID: PMC4036788.

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Parobek CM, Jiang LY, Patel JC, Alvarez-Martínez MJ, Miro JM, Worodria W, Andama A, Fong S, Huang L, Meshnick SR, Taylor SM, Juliano JJ. Multilocus microsatellite genotyping array for investigation of genetic epidemiology of Pneumocystis jirovecii. J Clin Microbiol. 2014 May;52(5):1391-9. doi: 10.1128/JCM.02531-13. Epub 2014 Feb 12. PubMed PMID: 24523468; PubMed Central PMCID: PMC3993678.

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Parobek C, Jiang L, Patel J, Alvarez-Martínez M, Miro J, Worodria W, Andama A, Fong S, Huang L, Meshnick S, Taylor S, Juliano J. Multilocus Microsatellite Genotyping Array for Investigation of Genetic Epidemiology of Pneumocystis jirovecii. Journal of Clinical Microbiology. 2014 May; 52(5):1391-1399. doi: 10.1128/JCM.02531-13.

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Parobek CM, Bailey JA, Hathaway NJ, Socheat D, Rogers WO, Juliano JJ. Differing patterns of selection and geospatial genetic diversity within two leading Plasmodium vivax candidate vaccine antigens. PLoS Negl Trop Dis. 2014 Apr;8(4):e2796. doi: 10.1371/journal.pntd.0002796. eCollection 2014 Apr. PubMed PMID: 24743266; PubMed Central PMCID: PMC3990511.

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Ponnusamy L, Gonzalez A, Van Treuren W, Weiss S, Parobek CM, Juliano JJ, Knight R, Roe RM, Apperson CS, Meshnick SR. Diversity of Rickettsiales in the microbiome of the lone star tick, Amblyomma americanum. Appl Environ Microbiol. 2014 Jan;80(1):354-9. doi: 10.1128/AEM.02987-13. Epub 2013 Oct 25. PubMed PMID: 24162580; PubMed Central PMCID: PMC3910995.

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Ponnusamy L, Gonzalez A, Van Treuren W, Weiss S, Parobek C, Juliano J, Knight R, Roe R, Apperson C, Meshnick S. Diversity of Rickettsiales in the Microbiome of the Lone Star Tick, Amblyomma americanum. Applied and Environmental Microbiology. 2014 January; 80(1):354-359. doi: 10.1128/AEM.02987-13.

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Taylor SM, Parobek CM, Aragam N, Ngasala BE, Mårtensson A, Meshnick SR, Juliano JJ. Pooled deep sequencing of Plasmodium falciparum isolates: an efficient and scalable tool to quantify prevailing malaria drug-resistance genotypes. J Infect Dis. 2013 Dec 15;208(12):1998-2006. doi: 10.1093/infdis/jit392. Epub 2013 Aug 1. PubMed PMID: 23908494; PubMed Central PMCID: PMC3836461.

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Taylor S, Parobek C, Aragam N, Ngasala B, Mårtensson A, Meshnick S, Juliano J. Pooled Deep Sequencing of Plasmodium falciparum Isolates: An Efficient and Scalable Tool to Quantify Prevailing Malaria Drug-Resistance Genotypes. The Journal of Infectious Diseases. 2013 December; 208(12):1998-2006. doi: 10.1093/infdis/jit392.

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Taylor SM, Antonia AL, Parobek CM, Juliano JJ, Janko M, Emch M, Alam MT, Udhayakumar V, Tshefu AK, Meshnick SR. Plasmodium falciparum sulfadoxine resistance is geographically and genetically clustered within the DR Congo. Sci Rep. 2013;3:1165. doi: 10.1038/srep01165. Epub 2013 Jan 30. PubMed PMID: 23372922; PubMed Central PMCID: PMC3558697.

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Taylor S, Antonia A, Parobek C, Juliano J, Janko M, Emch M, Alam M, Udhayakumar V, Tshefu A, Meshnick S. Plasmodium falciparum sulfadoxine resistance is geographically and genetically clustered within the DR Congo. Scientific Reports. 2013 January; 3(1):-. doi: 10.1038/srep01165.

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Taylor SM, Parobek CM, Fairhurst RM. Haemoglobinopathies and the clinical epidemiology of malaria: a systematic review and meta-analysis. Lancet Infect Dis. 2012 Jun;12(6):457-68. doi: 10.1016/S1473-3099(12)70055-5. Epub 2012 Mar 23. Review. PubMed PMID: 22445352; PubMed Central PMCID: PMC3404513.

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Taylor S, Parobek C, Fairhurst R. Haemoglobinopathies and the clinical epidemiology of malaria: a systematic review and meta-analysis. The Lancet Infectious Diseases. 2012 June; 12(6):457-468. doi: 10.1016/S1473-3099(12)70055-5.