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    zhx3b zinc fingers and homeoboxes 3b [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102218014, updated on 12-Sep-2024

    Summary

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    Gene symbol
    zhx3b
    Gene description
    zinc fingers and homeoboxes 3b
    See related
    Ensembl:ENSXMAG00000015457
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Also known as
    zhx3
    Orthologs
    human zebrafish all
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    Genomic context

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    See zhx3b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 1 NC_036443.1 (18014841..18030719, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372244.1 (109082..116846, complement)

    Chromosome 1 - NC_036443.1Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase Ib Neighboring gene phospholipase C, gamma 1 Neighboring gene RAB5 interacting factor Neighboring gene DEAH-box helicase 35

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc fingers and homeoboxes protein 3-like
    Names
    zinc fingers and homeoboxes 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036443.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      18014841..18030719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023336511.1 → XP_023192279.1  zinc fingers and homeoboxes protein 3-like isoform X2

      UniProtKB/TrEMBL
      A0A3B5PTC4, M4ALZ0
      Related
      ENSXMAP00000015484.2, ENSXMAT00000015507.2
      Conserved Domains (4) summary
      smart00389
      Location:791 → 836
      HOX; Homeodomain
      cd00086
      Location:639 → 690
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam07058
      Location:440 → 530
      MAP70; Microtubule-associated protein 70
      cl25496
      Location:375 → 595
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. XM_014469746.2 → XP_014325232.1  zinc fingers and homeoboxes protein 3-like isoform X1

      UniProtKB/TrEMBL
      A0A3B5PTC4
      Related
      ENSXMAP00000021797.1, ENSXMAT00000023113.1
      Conserved Domains (2) summary
      smart00389
      Location:791 → 836
      HOX; Homeodomain
      cd00086
      Location:639 → 690
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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