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    hoxa1a homeobox A1a [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102224744, updated on 12-Sep-2024

    Summary

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    Gene symbol
    hoxa1a
    Gene description
    homeobox A1a
    See related
    Ensembl:ENSXMAG00000001039
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Also known as
    hoxa1
    Orthologs
    human zebrafish all
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    Genomic context

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    See hoxa1a in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 13 NC_036455.1 (20670198..20672122)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372261.1 (1601110..1602900, complement)

    Chromosome 13 - NC_036455.1Genomic Context describing neighboring genes Neighboring gene homeobox A3a Neighboring gene uncharacterized LOC111610530 Neighboring gene uncharacterized LOC111610531 Neighboring gene homeobox A2 Neighboring gene uncharacterized LOC111610635 Neighboring gene sorting nexin 10a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-A1
    Names
    homeobox A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036455.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      20670198..20672122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005802718.2 → XP_005802775.1  homeobox protein Hox-A1

      UniProtKB/TrEMBL
      M3ZFN3
      Related
      ENSXMAP00000001025.2, ENSXMAT00000001028.2
      Conserved Domains (2) summary
      COG5576
      Location:163 → 271
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:218 → 270
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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