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    tox4a TOX high mobility group box family member 4 a [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102217292, updated on 10-Mar-2024

    Summary

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    Gene symbol
    tox4a
    Gene description
    TOX high mobility group box family member 4 a
    See related
    Ensembl:ENSXMAG00000000362
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    zebrafish all
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    Genomic context

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    See tox4a in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 6 NC_036448.1 (8615558..8620885)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372431.1 (226512..231158, complement)

    Chromosome 6 - NC_036448.1Genomic Context describing neighboring genes Neighboring gene cerebellin 12 Neighboring gene chromodomain helicase DNA binding protein 8 Neighboring gene E3 ubiquitin-protein ligase RNF135-like Neighboring gene uncharacterized LOC102216786

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOX high mobility group box family member 4-A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036448.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      8615558..8620885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023335826.1 → XP_023191594.1  TOX high mobility group box family member 4-A-like

      UniProtKB/TrEMBL
      M3ZDS5
      Related
      ENSXMAP00000000367.2, ENSXMAT00000000369.2
      Conserved Domains (2) summary
      cd00084
      Location:306 → 355
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
      cl26386
      Location:390 → 586
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    Nucleotide Protein Strain
    Heading Accession and Version

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