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    HMGB1 high mobility group box 1 [ Tursiops truncatus (common bottlenose dolphin) ]

    Gene ID: 101324923, updated on 8-Mar-2024

    Summary

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    Gene symbol
    HMGB1
    Gene description
    high mobility group box 1
    See related
    EnsemblRapid:ENSTTRG00000010327
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tursiops truncatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
    Orthologs
    human mouse all
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    Genomic context

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    See HMGB1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current mTurTru1.mat.Y (GCF_011762595.1) 18 NC_047051.1 (7250772..7256998, complement)
    101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017843255.1 (25460435..25462584)

    Chromosome 18 - NC_047051.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109550246 Neighboring gene uncharacterized LOC117308821 Neighboring gene uncharacterized LOC109550244 Neighboring gene uncharacterized LOC109550245 Neighboring gene pre-B-cell leukemia transcription factor 3-like Neighboring gene ubiquitin specific peptidase like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding, bending IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group protein B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mTurTru1.mat.Y Primary Assembly

    Genomic

    1. NC_047051.1 Reference mTurTru1.mat.Y Primary Assembly

      Range
      7250772..7256998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033843799.1 → XP_033699690.1  high mobility group protein B1

      UniProtKB/TrEMBL
      A0A6J3QBF4
      Related
      ENSTTRP00000033967.1, ENSTTRT00000026879.1
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain

    2. XM_033843800.1 → XP_033699691.1  high mobility group protein B1

      UniProtKB/TrEMBL
      A0A6J3QBF4
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain
    Nucleotide Protein
    Heading Accession and Version

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