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    FOXA1 forkhead box A1 [ Tursiops truncatus (common bottlenose dolphin) ]

    Gene ID: 101332260, updated on 8-Mar-2024

    Summary

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    Gene symbol
    FOXA1
    Gene description
    forkhead box A1
    See related
    EnsemblRapid:ENSTTRG00000002855
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tursiops truncatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
    Orthologs
    human mouse all
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    Genomic context

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    See FOXA1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current mTurTru1.mat.Y (GCF_011762595.1) 2 NC_047035.1 (61250637..61256067)
    101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017842414.1 (55095962..55101710)

    Chromosome 2 - NC_047035.1Genomic Context describing neighboring genes Neighboring gene somatostatin receptor 1 Neighboring gene tetratricopeptide repeat domain 6 Neighboring gene mirror-image polydactyly 1 Neighboring gene eukaryotic translation initiation factor 2 subunit 3-like Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 25 member 21 Neighboring gene paired box 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 3-alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mTurTru1.mat.Y Primary Assembly

    Genomic

    1. NC_047035.1 Reference mTurTru1.mat.Y Primary Assembly

      Range
      61250637..61256067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004326768.3 → XP_004326816.1  hepatocyte nuclear factor 3-alpha

      UniProtKB/TrEMBL
      A0A2U3V8N5
      Related
      ENSTTRP00000002678.2, ENSTTRT00000002855.2
      Conserved Domains (3) summary
      pfam08430
      Location:17 → 168
      Forkhead_N; Forkhead N-terminal region
      pfam09354
      Location:392 → 455
      HNF_C; HNF3 C-terminal domain
      pfam00250
      Location:169 → 254
      Forkhead; Forkhead domain
    Nucleotide Protein
    Heading Accession and Version

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