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    GFI1B growth factor independent 1B transcriptional repressor [ Carlito syrichta (Philippine tarsier) ]

    Gene ID: 103250928, updated on 11-Mar-2024

    Summary

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    Gene symbol
    GFI1B
    Gene description
    growth factor independent 1B transcriptional repressor
    See related
    Ensembl:ENSTSYG00000006831
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carlito syrichta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
    Orthologs
    human mouse all
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    Genomic context

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    See GFI1B in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007079802.1 (265340..271861, complement)

    NW_007079802.1Genomic Context describing neighboring genes Neighboring gene phytanoyl-CoA dioxygenase, peroxisomal-like Neighboring gene vesicle-associated membrane protein-associated protein A pseudogene Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene tuberous sclerosis 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007079802 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein Gfi-1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Genomic

    1. NW_007079802.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

      Range
      265340..271861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008049512.1 → XP_008047703.1  zinc finger protein Gfi-1b isoform X2

      UniProtKB/TrEMBL
      A0A1U7SU71
      Related
      ENSTSYP00000006248.2, ENSTSYT00000006825.2
      Conserved Domains (4) summary
      COG5048
      Location:184 → 261
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:176 → 196
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:174 → 196
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:216 → 241
      zf-H2C2_2; Zinc-finger double domain

    2. XM_008049511.1 → XP_008047702.1  zinc finger protein Gfi-1b isoform X1

      UniProtKB/TrEMBL
      A0A1U7T447
      Related
      ENSTSYP00000025489.1, ENSTSYT00000034777.1
      Conserved Domains (3) summary
      COG5048
      Location:230 → 307
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:222 → 242
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:262 → 287
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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