U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    EED embryonic ectoderm development [ Carlito syrichta (Philippine tarsier) ]

    Gene ID: 103273647, updated on 11-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    EED
    Gene description
    embryonic ectoderm development
    See related
    Ensembl:ENSTSYG00000005232
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carlito syrichta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EED in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007056756.1 (235734..271368, complement)

    NW_007056756.1Genomic Context describing neighboring genes Neighboring gene heat shock protein nuclear import factor hikeshi Neighboring gene protein SET pseudogene Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial pseudogene Neighboring gene methylmalonic aciduria and homocystinuria type D protein, mitochondrial pseudogene Neighboring gene phosphatidylinositol binding clathrin assembly protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_007056756 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESC/E(Z) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    polycomb protein EED

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Genomic

    1. NW_007056756.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

      Range
      235734..271368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021718839.1 → XP_021574514.1  polycomb protein EED isoform X4

      UniProtKB/TrEMBL
      A0A3Q0EEH3
      Related
      ENSTSYP00000026255.1, ENSTSYT00000037146.1
      Conserved Domains (2) summary
      sd00039
      Location:96 → 140
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:150 → 358
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_008071090.2 → XP_008069281.1  polycomb protein EED isoform X2

      See identical proteins and their annotated locations for XP_008069281.1

      UniProtKB/TrEMBL
      A0A1U7UTT2
      Related
      ENSTSYP00000015676.1, ENSTSYT00000032634.1
      Conserved Domains (2) summary
      sd00039
      Location:96 → 140
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:150 → 438
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_021718831.1 → XP_021574506.1  polycomb protein EED isoform X1

      UniProtKB/TrEMBL
      A0A3Q0EFZ1
      Related
      ENSTSYP00000004809.1, ENSTSYT00000005255.2
      Conserved Domains (2) summary
      sd00039
      Location:96 → 140
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:150 → 463
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_021718835.1 → XP_021574510.1  polycomb protein EED isoform X3

      UniProtKB/TrEMBL
      A0A3Q0EJP9
      Conserved Domains (2) summary
      sd00039
      Location:96 → 140
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:150 → 398
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.