U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    lhx5 LIM homeobox 5 [ Takifugu rubripes (torafugu) ]

    Gene ID: 101079209, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    lhx5
    Gene description
    LIM homeobox 5
    See related
    Ensembl:ENSTRUG00000018387
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See lhx5 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 6 NC_042290.1 (8240391..8249222, complement)
    101 previous assembly FUGU5 (GCF_000180615.1) 6 NC_018895.1 (5719292..5727385, complement)

    Chromosome 6 - NC_042290.1Genomic Context describing neighboring genes Neighboring gene collagen type IV alpha-3-binding protein-like Neighboring gene 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like Neighboring gene beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4-like Neighboring gene mitotic spindle organizing protein 2B Neighboring gene tripartite motif containing 23 Neighboring gene peptidylprolyl isomerase domain and WD repeat containing 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LIM/homeobox protein Lhx5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042290.1 Reference fTakRub1.2 Primary Assembly

      Range
      8240391..8249222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029838097.1 → XP_029693957.1  LIM/homeobox protein Lhx5 isoform X1

      Conserved Domains (4) summary
      cd09367
      Location:5 → 56
      LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cd09375
      Location:64 → 119
      LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
      COG5576
      Location:142 → 253
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:194 → 248
      Homeobox; Homeobox domain

    2. XM_003965391.2 → XP_003965440.1  LIM/homeobox protein Lhx5 isoform X2

      UniProtKB/TrEMBL
      H2VCV9
      Related
      ENSTRUP00000047052.2, ENSTRUT00000047211.3
      Conserved Domains (3) summary
      cd09367
      Location:5 → 56
      LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cd09375
      Location:64 → 119
      LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
      pfam00046
      Location:183 → 237
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.