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    rxrba retinoid x receptor, beta a [ Takifugu rubripes (torafugu) ]

    Gene ID: 101065480, updated on 8-Mar-2024

    Summary

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    Gene symbol
    rxrba
    Gene description
    retinoid x receptor, beta a
    See related
    Ensembl:ENSTRUG00000008509
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Also known as
    rxrb
    Orthologs
    zebrafish all
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    Genomic context

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    See rxrba in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 12 NC_042296.1 (7909027..7928002, complement)
    101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004071261.1 (70274..84994, complement)

    Chromosome 12 - NC_042296.1Genomic Context describing neighboring genes Neighboring gene hydroxysteroid (17-beta) dehydrogenase 8 Neighboring gene collagen, type XI, alpha 2 Neighboring gene microRNA mir-219-2 Neighboring gene uncharacterized LOC115251647 Neighboring gene H-2 class I histocompatibility antigen, Q9 alpha chain-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables retinoic acid-responsive element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to retinoic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor RXR-beta-A
    Names
    retinoid X receptor beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042296.1 Reference fTakRub1.2 Primary Assembly

      Range
      7909027..7928002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029844576.1 → XP_029700436.1  retinoic acid receptor RXR-beta-A isoform X4

      UniProtKB/TrEMBL
      A0A674N225, A0A674PQ64
      Related
      ENSTRUP00000067313.1, ENSTRUT00000076699.1
      Conserved Domains (3) summary
      cd06943
      Location:220 → 479
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:126 → 201
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:21 → 119
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    2. XM_029844575.1 → XP_029700435.1  retinoic acid receptor RXR-beta-A isoform X4

      UniProtKB/TrEMBL
      A0A674N225, A0A674PQ64
      Conserved Domains (3) summary
      cd06943
      Location:220 → 479
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:126 → 201
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:21 → 119
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    3. XM_029844573.1 → XP_029700433.1  retinoic acid receptor RXR-beta-A isoform X2

      UniProtKB/TrEMBL
      A0A674PQ64
      Related
      ENSTRUP00000087823.1, ENSTRUT00000063595.1

    4. XM_029844572.1 → XP_029700432.1  retinoic acid receptor RXR-beta-A isoform X1

      UniProtKB/TrEMBL
      A0A674PQ64
      Conserved Domains (3) summary
      cd06943
      Location:267 → 526
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:173 → 248
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:68 → 166
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    5. XM_029844577.1 → XP_029700437.1  retinoic acid receptor RXR-beta-A isoform X5

      UniProtKB/TrEMBL
      A0A6D2WZC2
      Related
      ENSTRUP00000021319.3, ENSTRUT00000021407.3

    6. XM_029844574.1 → XP_029700434.1  retinoic acid receptor RXR-beta-A isoform X3

      UniProtKB/TrEMBL
      A0A6D2WZC2
      Related
      ENSTRUP00000021318.3, ENSTRUT00000021406.3
      Conserved Domains (3) summary
      cd06943
      Location:267 → 488
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:173 → 248
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:68 → 166
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    7. XM_029844578.1 → XP_029700438.1  retinoic acid receptor RXR-beta-A isoform X6

      UniProtKB/TrEMBL
      A0A6D2WZC2
      Conserved Domains (3) summary
      cd06956
      Location:173 → 248
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:68 → 166
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
      cl11397
      Location:267 → 426
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    Nucleotide Protein
    Heading Accession and Version

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