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    LOC101070861 myelin transcription factor 1-like [ Takifugu rubripes (torafugu) ]

    Gene ID: 101070861, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101070861
    Gene description
    myelin transcription factor 1-like
    See related
    Ensembl:ENSTRUG00000007068
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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    Genomic context

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    See LOC101070861 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 3 NC_042287.1 (17341918..17353377)
    101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004072456.1 (147377..156284)

    Chromosome 3 - NC_042287.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115249078 Neighboring gene organic solute transporter subunit alpha-like Neighboring gene protein-serine O-palmitoleoyltransferase porcupine-like Neighboring gene putative Polycomb group protein ASXL1 Neighboring gene uncharacterized PE-PGRS family protein PE_PGRS20-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myelin transcription factor 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042287.1 Reference fTakRub1.2 Primary Assembly

      Range
      17341918..17353377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029833312.1 → XP_029689172.1  myelin transcription factor 1-like isoform X3

      Related
      ENSTRUT00000017433.3
      Conserved Domains (3) summary
      pfam01530
      Location:943 → 971
      zf-C2HC; Zinc finger, C2HC type
      pfam05667
      Location:1100 → 1154
      DUF812; Protein of unknown function (DUF812)
      pfam08474
      Location:654 → 891
      MYT1; Myelin transcription factor 1

    2. XM_029833313.1 → XP_029689173.1  myelin transcription factor 1-like isoform X4

    3. XM_029833315.1 → XP_029689175.1  myelin transcription factor 1-like isoform X6

    4. XM_029833311.1 → XP_029689171.1  myelin transcription factor 1-like isoform X2

    5. XM_029833309.1 → XP_029689169.1  myelin transcription factor 1-like isoform X1

      Conserved Domains (4) summary
      COG4942
      Location:1077 → 1224
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      pfam01530
      Location:943 → 971
      zf-C2HC; Zinc finger, C2HC type
      pfam05667
      Location:1100 → 1154
      DUF812; Protein of unknown function (DUF812)
      pfam08474
      Location:654 → 891
      MYT1; Myelin transcription factor 1

    6. XM_029833317.1 → XP_029689177.1  myelin transcription factor 1-like isoform X8

      Conserved Domains (3) summary
      pfam01530
      Location:921 → 949
      zf-C2HC; Zinc finger, C2HC type
      pfam05667
      Location:1078 → 1132
      DUF812; Protein of unknown function (DUF812)
      pfam08474
      Location:632 → 869
      MYT1; Myelin transcription factor 1

    7. XM_029833310.1 → XP_029689170.1  myelin transcription factor 1-like isoform X1

      Conserved Domains (4) summary
      COG4942
      Location:1077 → 1224
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      pfam01530
      Location:943 → 971
      zf-C2HC; Zinc finger, C2HC type
      pfam05667
      Location:1100 → 1154
      DUF812; Protein of unknown function (DUF812)
      pfam08474
      Location:654 → 891
      MYT1; Myelin transcription factor 1

    8. XM_029833314.1 → XP_029689174.1  myelin transcription factor 1-like isoform X5

    9. XM_029833316.1 → XP_029689176.1  myelin transcription factor 1-like isoform X7

    Nucleotide Protein
    Heading Accession and Version

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