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    PHOX2B paired like homeobox 2B [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100228525, updated on 13-Aug-2024

    Summary

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    Gene symbol
    PHOX2B
    Gene description
    paired like homeobox 2B
    See related
    Ensembl:ENSTGUG00000008613
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Orthologs
    human mouse all
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    Genomic context

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    See PHOX2B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bTaeGut1.4.pri (GCF_003957565.2) 4 NC_044215.2 (23457651..23459924, complement)
    105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 4 NC_045002.1 (23467026..23469306, complement)

    Chromosome 4 - NC_044215.2Genomic Context describing neighboring genes Neighboring gene ubiquitin C-terminal hydrolase L1 Neighboring gene LIM and calponin homology domains 1 Neighboring gene uncharacterized LOC121469877 Neighboring gene transmembrane protein 33 Neighboring gene solute carrier family 30 member 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired mesoderm homeobox protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut1.4.pri Primary Assembly

    Genomic

    1. NC_044215.2 Reference bTaeGut1.4.pri Primary Assembly

      Range
      23457651..23459924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002188672.4 → XP_002188708.2  paired mesoderm homeobox protein 2B

      UniProtKB/TrEMBL
      H0ZE58
      Related
      ENSTGUP00000008870.2
      Conserved Domains (1) summary
      pfam00046
      Location:102 → 155
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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