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    LOC100220846 lethal(3)malignant brain tumor-like protein 4 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100220846, updated on 13-Aug-2024

    Summary

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    Gene symbol
    LOC100220846
    Gene description
    lethal(3)malignant brain tumor-like protein 4
    See related
    Ensembl:ENSTGUG00000000758
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
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    Genomic context

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    See LOC100220846 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current bTaeGut1.4.pri (GCF_003957565.2) 23 NC_044235.2 (6464613..6507195)
    105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 23 NC_045021.1 (6464483..6506788)

    Chromosome 23 - NC_044235.2Genomic Context describing neighboring genes Neighboring gene mitochondrial trans-2-enoyl-CoA reductase Neighboring gene serine and arginine rich splicing factor 4 Neighboring gene transmembrane protein 200B Neighboring gene erythrocyte membrane protein band 4.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lethal(3)malignant brain tumor-like protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut1.4.pri Primary Assembly

    Genomic

    1. NC_044235.2 Reference bTaeGut1.4.pri Primary Assembly

      Range
      6464613..6507195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030290551.3 → XP_030146411.2  lethal(3)malignant brain tumor-like protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A674GWZ1
      Conserved Domains (3) summary
      PHA02682
      Location:6 → 100
      PHA02682; ORF080 virion core protein; Provisional
      cd09582
      Location:798 → 863
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:499 → 591
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

    2. XM_030290555.3 → XP_030146415.2  lethal(3)malignant brain tumor-like protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A674GWZ1
      Conserved Domains (3) summary
      PHA02682
      Location:6 → 100
      PHA02682; ORF080 virion core protein; Provisional
      cd09582
      Location:761 → 826
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:282 → 380
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

    3. XM_030290553.3 → XP_030146413.2  lethal(3)malignant brain tumor-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A674GWZ1
      Conserved Domains (3) summary
      PHA02682
      Location:6 → 100
      PHA02682; ORF080 virion core protein; Provisional
      cd09582
      Location:797 → 862
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:498 → 590
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

    4. XM_030290554.3 → XP_030146414.2  lethal(3)malignant brain tumor-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A674GWZ1
      Conserved Domains (3) summary
      PHA02682
      Location:6 → 100
      PHA02682; ORF080 virion core protein; Provisional
      cd09582
      Location:797 → 862
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:498 → 590
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

    5. XM_030290556.3 → XP_030146416.1  lethal(3)malignant brain tumor-like protein 4 isoform X5

      UniProtKB/TrEMBL
      H0YR69
      Related
      ENSTGUP00000000777.2
      Conserved Domains (3) summary
      cd09582
      Location:620 → 685
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:321 → 413
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam01530
      Location:427 → 455
      zf-C2HC; Zinc finger, C2HC type

    6. XM_041720719.1 → XP_041576653.1  lethal(3)malignant brain tumor-like protein 4 isoform X8

      UniProtKB/TrEMBL
      H0YR69
      Conserved Domains (3) summary
      cd09582
      Location:596 → 661
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:297 → 389
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam01530
      Location:403 → 431
      zf-C2HC; Zinc finger, C2HC type

    7. XM_041720718.1 → XP_041576652.1  lethal(3)malignant brain tumor-like protein 4 isoform X7

      UniProtKB/TrEMBL
      H0YR69
      Conserved Domains (2) summary
      cd09582
      Location:597 → 662
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:298 → 390
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

    8. XM_041720716.1 → XP_041576650.1  lethal(3)malignant brain tumor-like protein 4 isoform X5

      UniProtKB/TrEMBL
      H0YR69
      Conserved Domains (3) summary
      cd09582
      Location:620 → 685
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:321 → 413
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam01530
      Location:427 → 455
      zf-C2HC; Zinc finger, C2HC type

    9. XM_041720717.1 → XP_041576651.1  lethal(3)malignant brain tumor-like protein 4 isoform X6

      UniProtKB/TrEMBL
      H0YR69
      Conserved Domains (2) summary
      cd09582
      Location:619 → 684
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00561
      Location:320 → 412
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    Nucleotide Protein
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