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    TOX2 TOX high mobility group box family member 2 [ Sus scrofa (pig) ]

    Gene ID: 100738797, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TOX2provided by VGNC
    Official Full Name
    TOX high mobility group box family member 2provided by VGNC
    Primary source
    VGNC:VGNC:95734
    See related
    Ensembl:ENSSSCG00000022202
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in ovary (RPKM 13.7), lung (RPKM 1.5) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See TOX2 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (46433005..46577076)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (51986557..52002533)

    Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene gametocyte specific factor 1 like Neighboring gene uncharacterized LOC110257369 Neighboring gene junctophilin 2 Neighboring gene oxidative stress responsive serine rich 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: TOX high mobility group box family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

      Range
      46433005..46577076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021077539.1 → XP_020933198.1  LOW QUALITY PROTEIN: TOX high mobility group box family member 2

      UniProtKB/TrEMBL
      A0A480VY65
      Related
      ENSSSCP00000019830.3, ENSSSCT00000030459.4
      Conserved Domains (1) summary
      cd00084
      Location:246 → 311
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    Nucleotide Protein
    Heading Accession and Version

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