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    BAZ2B bromodomain adjacent to zinc finger domain 2B [ Sus scrofa (pig) ]

    Gene ID: 100523825, updated on 8-Mar-2024

    Summary

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    Gene symbol
    BAZ2B
    Gene description
    bromodomain adjacent to zinc finger domain 2B
    See related
    Ensembl:ENSSSCG00000015882
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 8.3), ovary (RPKM 5.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See BAZ2B in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (66254888..66411261, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (73484177..73887256, complement)

    Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256997 Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 Neighboring gene WD repeat, sterile alpha motif and U-box domain containing 1 Neighboring gene uncharacterized LOC110256931 Neighboring gene uncharacterized LOC110256932 Neighboring gene membrane associated ring-CH-type finger 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

      Range
      66254888..66411261 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021074758.1 → XP_020930417.1  LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 2B

      UniProtKB/TrEMBL
      A0A8D0RDP1, A0A8D0YLA7, F1RPS2
      Related
      ENSSSCP00000016830.4, ENSSSCT00000017293.5
      Conserved Domains (8) summary
      cd05503
      Location:2098 → 2194
      Bromo_BAZ2A_B_like; Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting ...
      smart00571
      Location:1121 → 1183
      DDT; domain in different transcription and chromosome remodeling factors
      cd01397
      Location:776 → 848
      HAT_MBD; Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The ...
      cd15630
      Location:1966 → 2014
      PHD_BAZ2B; PHD finger found in bromodomain adjacent to zinc finger domain protein 2B (BAZ2B)
      pfam15612
      Location:1224 → 1264
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:1404 → 1436
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
      cl25599
      Location:65 → 258
      Nucleoporin_FG2; Nucleoporin FG repeated region
      cl26511
      Location:885 → 1097
      Neuromodulin_N; Gap junction protein N-terminal region
    Nucleotide Protein
    Heading Accession and Version

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