U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    HMBOX1 homeobox containing 1 [ Sus scrofa (pig) ]

    Gene ID: 100153880, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    HMBOX1provided by VGNC
    Official Full Name
    homeobox containing 1provided by VGNC
    Primary source
    VGNC:VGNC:88898
    See related
    Ensembl:ENSSSCG00000009682
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in kidney (RPKM 9.1), lung (RPKM 8.4) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HMBOX1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (12692607..12895078)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (13933447..14137116)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene exostosin like glycosyltransferase 3 Neighboring gene spermidine synthase pseudogene Neighboring gene integrator complex subunit 9 Neighboring gene uncharacterized LOC110256610 Neighboring gene mitochondrial import inner membrane translocase subunit Tim23 pseudogene Neighboring gene kinesin family member 13B Neighboring gene microRNA mir-124a-2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeobox-containing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      12692607..12895078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005670463.3 → XP_005670520.1  homeobox-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8D0RZA0, A0A8D1PWW8
      Related
      ENSSSCP00000045173.3, ENSSSCT00000059777.3
      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 226
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

    2. XM_005670458.3 → XP_005670515.1  homeobox-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1VB68, A0A8D1CM46, A0A8D1LML1, F1RJQ1
      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 226
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

    3. XM_001926736.7 → XP_001926771.4  homeobox-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A4X1VB75, A0A8D0I1B5, A0A8D1CM46, F1RJQ0, F1RJQ1
      Related
      ENSSSCP00000010341.4, ENSSSCT00000010617.5
      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 226
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

    4. XM_005670459.3 → XP_005670516.1  homeobox-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D1CM46, F1RJQ1
      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 226
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

    5. XM_005670460.3 → XP_005670517.1  homeobox-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8D1CM46, F1RJQ1
      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 226
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

    6. XM_005670461.3 → XP_005670518.1  homeobox-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8D1BW61, A0A8D1CM46, F1RJQ1
      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 226
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus

    7. XM_005670462.3 → XP_005670519.1  homeobox-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8D1CM46, F1RJQ1
      Conserved Domains (2) summary
      cd00086
      Location:268 → 340
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam04814
      Location:25 → 226
      HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.