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    GRHL3 grainyhead like transcription factor 3 [ Sus scrofa (pig) ]

    Gene ID: 100521975, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GRHL3provided by VGNC
    Official Full Name
    grainyhead like transcription factor 3provided by VGNC
    Primary source
    VGNC:VGNC:88668
    See related
    Ensembl:ENSSSCG00000003539
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See GRHL3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (82014022..82050240)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (75665329..75699085)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene interleukin 22 receptor subunit alpha 1 Neighboring gene interferon lambda receptor 1 Neighboring gene sperm tail PG-rich repeat containing 1 Neighboring gene NIPA like domain containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    grainyhead-like protein 3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      82014022..82050240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021095540.1 → XP_020951199.1  grainyhead-like protein 3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A287B8R5, A0A4X1VX60, A0A8D0XCP8, A0A8D1NFN9
      Related
      ENSSSCP00000052472.1, ENSSSCT00000058757.3
      Conserved Domains (1) summary
      pfam04516
      Location:218 → 421
      CP2; CP2 transcription factor

    2. XM_003127705.6 → XP_003127753.4  grainyhead-like protein 3 homolog isoform X2

      UniProtKB/TrEMBL
      A0A4X1VWD6, A0A8D0R445, A0A8D0XCP8, F1STW0
      Related
      ENSSSCP00000003840.3, ENSSSCT00000003931.4
      Conserved Domains (1) summary
      pfam04516
      Location:164 → 375
      CP2; CP2 transcription factor
    Nucleotide Protein
    Heading Accession and Version

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