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    ZNF787 zinc finger protein 787 [ Sus scrofa (pig) ]

    Gene ID: 100521379, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZNF787provided by VGNC
    Official Full Name
    zinc finger protein 787provided by VGNC
    Primary source
    VGNC:VGNC:95303
    See related
    Ensembl:ENSSSCG00000003317
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 3.4), spleen (RPKM 2.8) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ZNF787 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (60422389..60446122, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (55573627..55585259, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene NLR family pyrin domain containing 8 Neighboring gene NLR family pyrin domain containing 5 Neighboring gene uncharacterized LOC102159166 Neighboring gene zinc finger protein 444 Neighboring gene uncharacterized LOC110261075

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytokine production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 787

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      60422389..60446122 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021095112.1 → XP_020950771.1  zinc finger protein 787 isoform X3

      UniProtKB/TrEMBL
      A0A4X1T5F2, F1RMK7
      Related
      ENSSSCP00000003596.3, ENSSSCT00000003681.5
      Conserved Domains (2) summary
      COG5048
      Location:67 → 200
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_021095110.1 → XP_020950769.1  zinc finger protein 787 isoform X2

      Conserved Domains (2) summary
      COG5048
      Location:74 → 207
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:75 → 95
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_021095111.1 → XP_020950770.1  zinc finger protein 787 isoform X2

      Conserved Domains (2) summary
      COG5048
      Location:74 → 207
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:75 → 95
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_021095113.1 → XP_020950772.1  zinc finger protein 787 isoform X3

      UniProtKB/TrEMBL
      A0A4X1T5F2, F1RMK7
      Conserved Domains (2) summary
      COG5048
      Location:67 → 200
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]

    5. XM_021095109.1 → XP_020950768.1  zinc finger protein 787 isoform X1

      Conserved Domains (2) summary
      COG5048
      Location:79 → 212
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    6. XM_021095114.1 → XP_020950773.1  zinc finger protein 787 isoform X3

      UniProtKB/TrEMBL
      A0A4X1T5F2, F1RMK7
      Conserved Domains (2) summary
      COG5048
      Location:67 → 200
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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