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    RORB RAR related orphan receptor B [ Sarcophilus harrisii (Tasmanian devil) ]

    Gene ID: 100918183, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RORB
    Gene description
    RAR related orphan receptor B
    See related
    Ensembl:ENSSHAG00000018693
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sarcophilus harrisii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
    Orthologs
    human mouse all
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    Genomic context

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    See RORB in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (249229499..249484554)
    102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823517.1 (3939371..3991270, complement)

    Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-beta pseudogene Neighboring gene splicing factor 45 pseudogene Neighboring gene transient receptor potential cation channel subfamily M member 6 Neighboring gene chromosome 1 C9orf40 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor ROR-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mSarHar1.11 Primary Assembly

    Genomic

    1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

      Range
      249229499..249484554
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031939553.1 → XP_031795413.1  nuclear receptor ROR-beta

      UniProtKB/TrEMBL
      A0A7N4P560, G3X332
      Related
      ENSSHAP00000032714.1, ENSSHAT00000035734.1
      Conserved Domains (2) summary
      cd06939
      Location:210 → 450
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:3 → 97
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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