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    SATB1 SATB homeobox 1 [ Sarcophilus harrisii (Tasmanian devil) ]

    Gene ID: 100923364, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SATB1
    Gene description
    SATB homeobox 1
    See related
    Ensembl:ENSSHAG00000015368
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sarcophilus harrisii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
    Orthologs
    human mouse all
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    Genomic context

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    See SATB1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current mSarHar1.11 (GCF_902635505.1) 5 NC_045430.1 (255634599..255732284, complement)
    102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 5 Unlocalized Scaffold NW_003843707.1 (1766576..1862183, complement)

    Chromosome 5 - NC_045430.1Genomic Context describing neighboring genes Neighboring gene protein SPT2 homolog Neighboring gene phospholipase C like 2 Neighboring gene TBC1 domain family member 5 Neighboring gene potassium voltage-gated channel subfamily H member 8 Neighboring gene EF-hand domain family member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding protein SATB1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mSarHar1.11 Primary Assembly

    Genomic

    1. NC_045430.1 Reference mSarHar1.11 Primary Assembly

      Range
      255634599..255732284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012551360.3 → XP_012406814.1  DNA-binding protein SATB1 isoform X4

      Conserved Domains (4) summary
      smart00389
      Location:642 → 699
      HOX; Homeodomain
      pfam02376
      Location:494 → 566
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:200 → 247
      CUTL; CUT1-like DNA-binding domain of SATB

    2. XM_023505174.2 → XP_023360942.1  DNA-binding protein SATB1 isoform X3

      UniProtKB/TrEMBL
      G3WRP7
      Related
      ENSSHAP00000018102.2, ENSSHAT00000018251.2
      Conserved Domains (4) summary
      smart00389
      Location:643 → 700
      HOX; Homeodomain
      cd11585
      Location:74 → 169
      SATB1_N; N-terminal domain of SATB1 and similar proteins
      pfam02376
      Location:366 → 443
      CUT; CUT domain
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    3. XM_012551359.3 → XP_012406813.1  DNA-binding protein SATB1 isoform X2

      UniProtKB/TrEMBL
      G3WRP6
      Conserved Domains (4) summary
      smart00389
      Location:674 → 731
      HOX; Homeodomain
      pfam02376
      Location:494 → 566
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:200 → 247
      CUTL; CUT1-like DNA-binding domain of SATB

    4. XM_023505173.2 → XP_023360941.1  DNA-binding protein SATB1 isoform X1

      UniProtKB/TrEMBL
      G3WRP6
      Related
      ENSSHAP00000018101.2, ENSSHAT00000018250.2
      Conserved Domains (4) summary
      smart00389
      Location:675 → 732
      HOX; Homeodomain
      cd11585
      Location:74 → 169
      SATB1_N; N-terminal domain of SATB1 and similar proteins
      pfam02376
      Location:366 → 443
      CUT; CUT domain
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    5. XM_003772014.4 → XP_003772062.1  DNA-binding protein SATB1 isoform X1

      UniProtKB/TrEMBL
      G3WRP6
      Conserved Domains (4) summary
      smart00389
      Location:675 → 732
      HOX; Homeodomain
      cd11585
      Location:74 → 169
      SATB1_N; N-terminal domain of SATB1 and similar proteins
      pfam02376
      Location:366 → 443
      CUT; CUT domain
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB
    Nucleotide Protein
    Heading Accession and Version

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