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    ZNF518B zinc finger protein 518B [ Sarcophilus harrisii (Tasmanian devil) ]

    Gene ID: 100917971, updated on 8-Mar-2024

    Summary

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    Gene symbol
    ZNF518B
    Gene description
    zinc finger protein 518B
    See related
    Ensembl:ENSSHAG00000013734
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sarcophilus harrisii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
    Orthologs
    human mouse all
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    Genomic context

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    See ZNF518B in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current mSarHar1.11 (GCF_902635505.1) 6 NC_045431.1 (2838721..2916019)
    102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 6 Unlocalized Scaffold NW_003846878.1 (1304423..1347724, complement)

    Chromosome 6 - NC_045431.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 9 Neighboring gene uncharacterized LOC116419867 Neighboring gene WD repeat domain 1 Neighboring gene uncharacterized LOC116419841 Neighboring gene cytokine dependent hematopoietic cell linker Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 518B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mSarHar1.11 Primary Assembly

    Genomic

    1. NC_045431.1 Reference mSarHar1.11 Primary Assembly

      Range
      2838721..2916019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031942099.1 → XP_031797959.1  zinc finger protein 518B isoform X1

      UniProtKB/TrEMBL
      A0A7N4UXJ8
      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    2. XM_031942101.1 → XP_031797961.1  zinc finger protein 518B isoform X3

      UniProtKB/TrEMBL
      A0A7N4NI69
      Related
      ENSSHAP00000023521.1, ENSSHAT00000040992.1
      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    3. XM_031942102.1 → XP_031797962.1  zinc finger protein 518B isoform X4

      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    4. XM_031942100.1 → XP_031797960.1  zinc finger protein 518B isoform X2

      UniProtKB/TrEMBL
      A0A7N4V7Y8
      Related
      ENSSHAP00000046050.1, ENSSHAT00000039231.1
      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    5. XM_031942096.1 → XP_031797956.1  zinc finger protein 518B isoform X1

      UniProtKB/TrEMBL
      A0A7N4UXJ8
      Related
      ENSSHAP00000023849.1, ENSSHAT00000047426.1
      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    6. XM_031942103.1 → XP_031797963.1  zinc finger protein 518B isoform X5

      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    7. XM_031942104.1 → XP_031797964.1  zinc finger protein 518B isoform X6

      UniProtKB/TrEMBL
      G3WL31
      Related
      ENSSHAP00000016136.2, ENSSHAT00000016269.2
      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    8. XM_023506099.2 → XP_023361867.1  zinc finger protein 518B isoform X1

      UniProtKB/TrEMBL
      A0A7N4UXJ8
      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    9. XM_031942098.1 → XP_031797958.1  zinc finger protein 518B isoform X1

      UniProtKB/TrEMBL
      A0A7N4UXJ8
      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain

    10. XM_031942097.1 → XP_031797957.1  zinc finger protein 518B isoform X1

      UniProtKB/TrEMBL
      A0A7N4UXJ8
      Conserved Domains (3) summary
      sd00017
      Location:175 → 195
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:214 → 239
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:200 → 224
      zf-H2C2_5; C2H2-type zinc-finger domain
    Nucleotide Protein
    Heading Accession and Version

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