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    Zfp108 zinc finger protein 108 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102548503, updated on 2-Nov-2024

    Summary

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    Symbol
    Zfp108provided by RGD
    Full Name
    zinc finger protein 108provided by RGD
    Primary source
    RGD:1564214
    See related
    EnsemblRapid:ENSRNOG00000032625 AllianceGenome:RGD:1564214
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564214
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 34.5), Kidney (RPKM 28.5) and 9 other tissues See more
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    Genomic context

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    See Zfp108 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (88948365..88956394)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (79820445..79827564)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (81093642..81100348)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 235, pseudogene 1 Neighboring gene high mobility group box 1 like 1 Neighboring gene zinc finger protein 61 Neighboring gene intraflagellar transport protein 81 homolog Neighboring gene zinc finger protein 94

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • AC118165.1

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC102548503; zinc finger protein 235
    Names
    zinc finger protein 235-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432836.1 → NP_001419765.1  uncharacterized protein LOC102548503 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    2. NM_001432837.1 → NP_001419766.1  uncharacterized protein LOC102548503 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AF39

    3. NM_001432838.1 → NP_001419767.1  uncharacterized protein LOC102548503 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AF39

    4. NM_001432839.1 → NP_001419768.1  uncharacterized protein LOC102548503 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6GIL0, A6J8X3

    5. NM_001432840.1 → NP_001419769.1  uncharacterized protein LOC102548503 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6J8X4

    6. NM_001432841.1 → NP_001419770.1  uncharacterized protein LOC102548503 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6J8X4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      88948365..88956394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017590009.3 → XP_017445498.2  zinc finger protein 235 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:342 → 679
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:542 → 562
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:8 → 47
      KRAB; KRAB box
      pfam13465
      Location:303 → 327
      zf-H2C2_2; Zinc-finger double domain

    2. XM_039093429.2 → XP_038949357.1  zinc finger protein 235 isoform X2

      Related
      ENSRNOP00000026088.7, ENSRNOT00000026088.7
      Conserved Domains (4) summary
      COG5048
      Location:339 → 676
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:539 → 559
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:8 → 48
      KRAB; KRAB box
      pfam13465
      Location:300 → 324
      zf-H2C2_2; Zinc-finger double domain

    3. XM_063277602.1 → XP_063133672.1  zinc finger protein 235 isoform X3

      Related
      ENSRNOP00000090073.1, ENSRNOT00000099999.2
    Nucleotide Protein Strain
    Heading Accession and Version

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