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    MYT1 myelin transcription factor 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 458428, updated on 17-Aug-2024

    Summary

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    Official Symbol
    MYT1provided by VGNC
    Official Full Name
    myelin transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:52088
    Locus tag
    CK820_G0037329
    See related
    Ensembl:ENSPTRG00000032477
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See MYT1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (70508025..70586980)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (70563506..70642461)

    Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107970085 Neighboring gene neuropeptides B and W receptor 2 Neighboring gene uncharacterized LOC107970084 Neighboring gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 Neighboring gene putative uncharacterized protein FLJ46235

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myelin transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      70508025..70586980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016938301.3 → XP_016793790.1  myelin transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A2I3RD96, A0A2I3RRS4, A0A2J8KNE4, A0A6D2WIG8
      Related
      ENSPTRP00000067347.1
      Conserved Domains (3) summary
      pfam01530
      Location:866 → 894
      zf-C2HC; Zinc finger, C2HC type
      pfam08474
      Location:556 → 814
      MYT1; Myelin transcription factor 1
      cl25732
      Location:1016 → 1088
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_016938302.4 → XP_016793791.1  myelin transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A2I3RD96

    3. XM_016938303.4 → XP_016793792.1  myelin transcription factor 1 isoform X3

      UniProtKB/TrEMBL
      A0A2I3RD96, A0A2J8KNF2
      Related
      ENSPTRP00000062612.1
      Conserved Domains (3) summary
      pfam01530
      Location:839 → 867
      zf-C2HC; Zinc finger, C2HC type
      pfam08474
      Location:556 → 787
      MYT1; Myelin transcription factor 1
      cl25732
      Location:989 → 1061
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_024352120.3 → XP_024207888.1  myelin transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A2I3RD96, A0A2I3RRS4, A0A2J8KNE4, A0A6D2WIG8
      Conserved Domains (3) summary
      pfam01530
      Location:866 → 894
      zf-C2HC; Zinc finger, C2HC type
      pfam08474
      Location:556 → 814
      MYT1; Myelin transcription factor 1
      cl25732
      Location:1016 → 1088
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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