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    TEF TEF transcription factor, PAR bZIP family member [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100173555, updated on 26-Mar-2024

    Summary

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    Gene symbol
    TEF
    Gene description
    TEF transcription factor, PAR bZIP family member
    Locus tag
    CR201_G0031949
    See related
    Ensembl:ENSPPYG00000011867
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 23 NC_085929.1 (47839499..47871716)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 22 NC_072007.1 (26937269..26969450)

    Chromosome 23 - NC_085929.1Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 2 Neighboring gene chondroadherin like Neighboring gene Ran GTPase activating protein 1 Neighboring gene zinc finger CCCH-type containing 7B Neighboring gene uncharacterized LOC100939619 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC129052738 Neighboring gene transducer of ERBB2, 2 Neighboring gene PHD finger protein 5A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • DKFZp459A027

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thyrotroph embryonic factor
    Names
    TEF, PAR bZIP transcription factor
    thyrotrophic embryonic factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001133092.1 → NP_001126564.1  thyrotroph embryonic factor

      See identical proteins and their annotated locations for NP_001126564.1

      Status: PROVISIONAL

      Source sequence(s)
      CR860549
      UniProtKB/TrEMBL
      Q5R6E2

    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_085929.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      47839499..47871716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009234403.4 → XP_009232678.1  thyrotroph embryonic factor isoform X3

      See identical proteins and their annotated locations for XP_009232678.1

      UniProtKB/TrEMBL
      A0A2J8TWT3, A0A6D2W236, Q5R9N9
      Related
      ENSPPYP00000013243.2
      Conserved Domains (1) summary
      cd14695
      Location:202 → 260
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

    2. XM_009234402.3 → XP_009232677.1  thyrotroph embryonic factor isoform X1

      See identical proteins and their annotated locations for XP_009232677.1

      UniProtKB/TrEMBL
      A0A2J8TWS0, A0A8I5TDV2
      Related
      ENSPPYP00000032858.1
      Conserved Domains (1) summary
      cd14695
      Location:232 → 290
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

    3. XM_054542969.2 → XP_054398944.1  thyrotroph embryonic factor isoform X2

      UniProtKB/TrEMBL
      A0A8I5YQJ8
    Nucleotide Protein
    Heading Accession and Version

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