U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC116956017 transcriptional repressor CTCF-like [ Petromyzon marinus (sea lamprey) ]

    Gene ID: 116956017, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC116956017
    Gene description
    transcriptional repressor CTCF-like
    See related
    EnsemblRapid:ENSPMAG00000004257
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Petromyzon marinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC116956017 in Genome Data Viewer
    Location:
    chromosome: 63
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current kPetMar1.pri (GCF_010993605.1) 63 NC_046131.1 (5663329..5679479)

    Chromosome 63 - NC_046131.1Genomic Context describing neighboring genes Neighboring gene transcription factor E2F4-like Neighboring gene cytokine induced apoptosis inhibitor 1 Neighboring gene F-actin-uncapping protein LRRC16A-like Neighboring gene interactor of little elongation complex ELL subunit 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_046131.1 Chromosome 63 Reference kPetMar1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcriptional repressor CTCF-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference kPetMar1.pri Primary Assembly

    Genomic

    1. NC_046131.1 Reference kPetMar1.pri Primary Assembly

      Range
      5663329..5679479
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032977409.1 → XP_032833300.1  transcriptional repressor CTCF-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7XFY7
      Conserved Domains (4) summary
      COG5048
      Location:696 → 863
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:706 → 726
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:947 → 972
      zf-H2C2_2; Zinc-finger double domain
      cd22554
      Location:130 → 407
      Slr4-like; S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4

    2. XM_032977408.1 → XP_032833299.1  transcriptional repressor CTCF-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7XFY7
      Conserved Domains (4) summary
      COG5048
      Location:696 → 863
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:706 → 726
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:947 → 972
      zf-H2C2_2; Zinc-finger double domain
      cd22554
      Location:130 → 407
      Slr4-like; S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4

    3. XM_032977411.1 → XP_032833302.1  transcriptional repressor CTCF-like isoform X2

      UniProtKB/TrEMBL
      A0AAJ7XGH5
      Related
      ENSPMAP00000004689.2, ENSPMAT00000004708.2
      Conserved Domains (4) summary
      COG5048
      Location:696 → 863
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:706 → 726
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:947 → 972
      zf-H2C2_2; Zinc-finger double domain
      cd22554
      Location:130 → 407
      Slr4-like; S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4

    4. XM_032977412.1 → XP_032833303.1  transcriptional repressor CTCF-like isoform X3

      UniProtKB/TrEMBL
      A0AAJ7XHC1
      Conserved Domains (4) summary
      COG5048
      Location:691 → 858
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:701 → 721
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:942 → 967
      zf-H2C2_2; Zinc-finger double domain
      cd22554
      Location:130 → 407
      Slr4-like; S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4

    5. XM_032977410.1 → XP_032833301.1  transcriptional repressor CTCF-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ7XFY7
      Conserved Domains (4) summary
      COG5048
      Location:696 → 863
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:706 → 726
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:947 → 972
      zf-H2C2_2; Zinc-finger double domain
      cd22554
      Location:130 → 407
      Slr4-like; S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases