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    zfr2 zinc finger RNA binding protein 2 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101166215, updated on 8-Mar-2024

    Summary

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    Gene symbol
    zfr2
    Gene description
    zinc finger RNA binding protein 2
    See related
    EnsemblRapid:ENSORLG00000017438
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    zebrafish all
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    Genomic context

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    See zfr2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 4 NC_019862.2 (32380031..32412533, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 4 NC_019862.1 (34434436..34465522, complement)

    Chromosome 4 - NC_019862.2Genomic Context describing neighboring genes Neighboring gene retinal homeobox gene 1 Neighboring gene megakaryocyte-associated tyrosine kinase Neighboring gene late embryogenesis abundant protein M17-like Neighboring gene ATCAY kinesin light chain interacting caytaxin a Neighboring gene muscle-specific beta 1 integrin binding protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger RNA-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019862.2 Reference ASM223467v1 Primary Assembly

      Range
      32380031..32412533 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011474585.3 → XP_011472887.1  zinc finger RNA-binding protein isoform X2

      UniProtKB/TrEMBL
      A0A3P9HJR5
      Conserved Domains (3) summary
      smart00572
      Location:714 → 975
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00451
      Location:517 → 548
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:304 → 326
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_011474584.3 → XP_011472886.1  zinc finger RNA-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A3P9HJR5, H2MSR1
      Related
      ENSORLP00000021804.3, ENSORLT00000021805.4
      Conserved Domains (3) summary
      smart00572
      Location:719 → 980
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00451
      Location:522 → 553
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:309 → 331
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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