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    foxf2a forkhead box F2a [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101168243, updated on 8-Mar-2024

    Summary

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    Gene symbol
    foxf2a
    Gene description
    forkhead box F2a
    See related
    EnsemblRapid:ENSORLG00000017250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
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    Genomic context

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    See foxf2a in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 17 NC_019875.2 (26529737..26532553)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 17 NC_019875.1 (27370798..27373687)

    Chromosome 17 - NC_019875.2Genomic Context describing neighboring genes Neighboring gene dual specificity protein phosphatase 22-B Neighboring gene forkhead box Q1a Neighboring gene forkhead box C1a Neighboring gene uncharacterized LOC111949090

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    forkhead box protein F2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019875.2 Reference ASM223467v1 Primary Assembly

      Range
      26529737..26532553
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004079376.4 → XP_004079424.1  forkhead box protein F2

      UniProtKB/TrEMBL
      A0A3P9HNX0, H2MS48
      Related
      ENSORLP00000021583.2, ENSORLT00000021584.3
      Conserved Domains (1) summary
      pfam00250
      Location:54 → 140
      Forkhead; Forkhead domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials