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    pou6f1 POU class 6 homeobox 1 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101157777, updated on 8-Mar-2024

    Summary

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    Gene symbol
    pou6f1
    Gene description
    POU class 6 homeobox 1
    See related
    EnsemblRapid:ENSORLG00000015567
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
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    Genomic context

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    See pou6f1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 7 NC_019865.2 (22365794..22379356)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 7 NC_019865.1 (22680119..22691403)

    Chromosome 7 - NC_019865.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101156894 Neighboring gene DAZ associated protein 2 Neighboring gene transcription factor CP2 Neighboring gene cysteine-serine-rich nuclear protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    POU domain, class 6, transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019865.2 Reference ASM223467v1 Primary Assembly

      Range
      22365794..22379356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011477539.3 → XP_011475841.1  POU domain, class 6, transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A3P9H830
      Related
      ENSORLP00000037001.2, ENSORLT00000044334.2
      Conserved Domains (3) summary
      smart00352
      Location:467 → 541
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:565 → 618
      Homeobox; Homeobox domain
      pfam03153
      Location:217 → 394
      TFIIA; Transcription factor IIA, alpha/beta subunit

    2. XM_011477540.3 → XP_011475842.1  POU domain, class 6, transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A3B3HZI1, A0A3P9H757
      Related
      ENSORLP00000044803.2, ENSORLT00000040349.2
      Conserved Domains (3) summary
      smart00352
      Location:456 → 530
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:554 → 607
      Homeobox; Homeobox domain
      pfam03153
      Location:206 → 383
      TFIIA; Transcription factor IIA, alpha/beta subunit
    Nucleotide Protein
    Heading Accession and Version

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