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    tead3b TEA domain family member 3 b [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101169194, updated on 8-Mar-2024

    Summary

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    Gene symbol
    tead3b
    Gene description
    TEA domain family member 3 b
    See related
    EnsemblRapid:ENSORLG00000006370
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Also known as
    tead3
    Orthologs
    zebrafish all
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    Genomic context

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    See tead3b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (12926388..12958954, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (11599979..11624110, complement)

    Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene plakophilin-1 Neighboring gene sphingomyelin phosphodiesterase 2b Neighboring gene tubby-related protein 1 Neighboring gene uncharacterized LOC110015119

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in embryonic organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hippo signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcriptional enhancer factor TEF-5
    Names
    TEA domain transcription factor 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019863.2 Reference ASM223467v1 Primary Assembly

      Range
      12926388..12958954 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023954933.1 → XP_023810701.1  transcriptional enhancer factor TEF-5 isoform X2

      UniProtKB/TrEMBL
      A0A3P9L0J8, H2LPM3, H2LPM5
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain

    2. XM_023954932.1 → XP_023810700.1  transcriptional enhancer factor TEF-5 isoform X1

      UniProtKB/TrEMBL
      A0A3B3HYC6, A0A3P9MC64, H2LPM5
      Related
      ENSORLP00000008007.3, ENSORLT00000008008.3
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain

    3. XM_023954937.1 → XP_023810705.1  transcriptional enhancer factor TEF-5 isoform X6

      UniProtKB/TrEMBL
      H2LPM4
      Related
      ENSORLP00000084740.1, ENSORLT00000070873.1
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain

    4. XM_023954935.1 → XP_023810703.1  transcriptional enhancer factor TEF-5 isoform X4

      UniProtKB/TrEMBL
      A0A3B3IFY2, A0A3P9L040, H2LPM4
      Related
      ENSORLP00000036819.2, ENSORLT00000036144.2
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain

    5. XM_023954938.1 → XP_023810706.1  transcriptional enhancer factor TEF-5 isoform X7

      UniProtKB/TrEMBL
      H2LPM5
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain

    6. XM_023954936.1 → XP_023810704.1  transcriptional enhancer factor TEF-5 isoform X5

      UniProtKB/TrEMBL
      H2LPM5
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain

    7. XM_023954934.1 → XP_023810702.1  transcriptional enhancer factor TEF-5 isoform X3

      UniProtKB/TrEMBL
      A0A3P9MCK3, H2LPM5
      Related
      ENSORLP00000086139.1, ENSORLT00000085933.1
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain

    8. XM_023954939.1 → XP_023810707.1  transcriptional enhancer factor TEF-5 isoform X8

      UniProtKB/TrEMBL
      H2LPM4
      Related
      ENSORLP00000008008.3, ENSORLT00000008009.3
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain

    9. XM_011474938.3 → XP_011473240.1  transcriptional enhancer factor TEF-5 isoform X1

      UniProtKB/TrEMBL
      A0A3B3HYC6, A0A3P9MC64, H2LPM5
      Conserved Domains (1) summary
      smart00426
      Location:4 → 71
      TEA; TEA domain
    Nucleotide Protein
    Heading Accession and Version

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