U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    sp1 sp1 transcription factor [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101161549, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    sp1
    Gene description
    sp1 transcription factor
    See related
    EnsemblRapid:ENSORLG00000005195
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See sp1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (10441523..10450266, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (8895717..8903048, complement)

    Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein 4-like Neighboring gene cell division cycle-associated protein 7 Neighboring gene thymocyte expressed, positive selection associated 1 Neighboring gene TAR (HIV) RNA binding protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor Sp1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019863.2 Reference ASM223467v1 Primary Assembly

      Range
      10441523..10450266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004068677.4 → XP_004068725.1  transcription factor Sp1

      UniProtKB/TrEMBL
      A0A3P9HXX5
      Related
      ENSORLP00000034132.2, ENSORLT00000036055.2
      Conserved Domains (5) summary
      COG5048
      Location:556 → 637
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:543 → 565
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:601 → 623
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:587 → 610
      zf-H2C2_2; Zinc-finger double domain
      cl21494
      Location:211 → 292
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.