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    rxrbb retinoid x receptor, beta b [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100711502, updated on 8-Mar-2024

    Summary

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    Gene symbol
    rxrbb
    Gene description
    retinoid x receptor, beta b
    See related
    Ensembl:ENSONIG00000002873
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Orthologs
    zebrafish all
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    Genomic context

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    See rxrbb in Genome Data Viewer
    Location:
    chromosome: LG11
    Exon count:
    11
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG11 NC_031976.2 (18065150..18073864)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG11 NC_031976.1 (25582625..25591363, complement)

    Linkage Group LG11 - NC_031976.2Genomic Context describing neighboring genes Neighboring gene complement C4 Neighboring gene uncharacterized LOC112848125 Neighboring gene putative GPI-anchored protein pfl2 Neighboring gene macrophage mannose receptor 1-like Neighboring gene formin homology 2 domain containing 3b Neighboring gene solute carrier family 40 member 1 Neighboring gene uncharacterized LOC112848243 Neighboring gene rap guanine nucleotide exchange factor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables retinoic acid-responsive element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to retinoic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta-A
    Names
    retinoic acid receptor RXR-beta-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031976.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      18065150..18073864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013277006.3 → XP_013132460.1  LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta-A

      UniProtKB/TrEMBL
      A0A669BIX7
      Related
      ENSONIP00000035688.1, ENSONIT00000082085.1
      Conserved Domains (3) summary
      cd06943
      Location:183 → 404
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:89 → 160
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:9 → 81
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases