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    ATF1 activating transcription factor 1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100340999, updated on 8-Mar-2024

    Summary

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    Gene symbol
    ATF1
    Gene description
    activating transcription factor 1
    See related
    Ensembl:ENSOCUG00000017023
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See ATF1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 4 NC_067377.1 (42213243..42275541, complement)

    Chromosome 4 - NC_067377.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase DDX18-like Neighboring gene ATP-dependent RNA helicase DDX18-like Neighboring gene disco interacting protein 2 homolog B Neighboring gene S-phase kinase-associated protein 1-like Neighboring gene voltage-dependent anion-selective channel protein 1-like Neighboring gene La ribonucleoprotein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067377.1 Chromosome 4 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. cAMP-responsive element binding protein: a vital link in embryonic hormonal adaptation. Schindler M, et al. Endocrinology, 2013 Jun. PMID 23568554
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate increasing expression for CREB, ATF1, and ATF3 during gastrulation.
      Title: cAMP-responsive element binding protein: a vital link in embryonic hormonal adaptation.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATF4-CREB1 transcription factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclic AMP-dependent transcription factor ATF-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067377.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      42213243..42275541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051846305.1 → XP_051702265.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    2. XM_051846304.1 → XP_051702264.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

      UniProtKB/TrEMBL
      G1TCU6

    3. XM_051846307.1 → XP_051702267.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

    4. XM_051846306.1 → XP_051702266.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials