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    ZNF394 zinc finger protein 394 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100352299, updated on 8-Mar-2024

    Summary

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    Gene symbol
    ZNF394
    Gene description
    zinc finger protein 394
    See related
    Ensembl:ENSOCUG00000002444
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See ZNF394 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 6 NC_067379.1 (28287884..28298115)

    Chromosome 6 - NC_067379.1Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain-containing protein 25 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene zinc finger protein 655 Neighboring gene zinc finger with KRAB and SCAN domains 5 Neighboring gene zinc finger protein OZF Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067379.1 Chromosome 6 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 394

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067379.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      28287884..28298115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002721884.4 → XP_002721930.2  zinc finger protein 394

      UniProtKB/TrEMBL
      G1SHK3
      Related
      ENSOCUP00000002111.3
      Conserved Domains (8) summary
      smart00431
      Location:75 → 185
      SCAN; leucine rich region
      cd07765
      Location:170 → 204
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      smart00349
      Location:170 → 232
      KRAB; krueppel associated box
      COG5048
      Location:364 → 522
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:367 → 387
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:421 → 443
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:75 → 163
      SCAN; SCAN domain
      pfam13465
      Location:379 → 404
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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