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    SMARCA1 SNF2 related chromatin remodeling ATPase 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 100603408, updated on 20-Sep-2024

    Summary

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    Gene symbol
    SMARCA1
    Gene description
    SNF2 related chromatin remodeling ATPase 1
    See related
    EnsemblRapid:ENSNLEG00000015179
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCA1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) X NC_044406.1 (115267571..115344778, complement)
    102 previous assembly Nleu_3.0 (GCF_000146795.2) X NC_019841.1 (116014672..116099241, complement)

    Chromosome X - NC_044406.1Genomic Context describing neighboring genes Neighboring gene tight junction-associated protein 1-like Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC115833268 Neighboring gene small nucleolar RNA SNORD112 Neighboring gene OCRL inositol polyphosphate-5-phosphatase Neighboring gene apelin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable global transcription activator SNF2L1
    Names
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044406.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      115267571..115344778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030806954.1 → XP_030662814.1  probable global transcription activator SNF2L1 isoform X6

      UniProtKB/TrEMBL
      A0A2I3GEI6
      Conserved Domains (1) summary
      PLN03142
      Location:60 → 1040
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    2. XM_030806953.1 → XP_030662813.1  probable global transcription activator SNF2L1 isoform X5

      UniProtKB/TrEMBL
      A0A2I3GEI6
      Related
      ENSNLEP00000018442.3, ENSNLET00000019359.4
      Conserved Domains (1) summary
      PLN03142
      Location:87 → 1034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    3. XM_030806952.1 → XP_030662812.1  probable global transcription activator SNF2L1 isoform X4

      UniProtKB/TrEMBL
      A0A2I3GEI6
      Conserved Domains (1) summary
      PLN03142
      Location:87 → 1046
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    4. XM_030806951.1 → XP_030662811.1  probable global transcription activator SNF2L1 isoform X3

      UniProtKB/TrEMBL
      A0A2I3GEI6
      Conserved Domains (1) summary
      PLN03142
      Location:87 → 1046
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    5. XM_030806947.1 → XP_030662807.1  probable global transcription activator SNF2L1 isoform X1

      UniProtKB/TrEMBL
      A0A2I3GEI6
      Related
      ENSNLEP00000029689.2, ENSNLET00000057446.2
      Conserved Domains (1) summary
      PLN03142
      Location:87 → 1069
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    6. XM_030806948.1 → XP_030662808.1  probable global transcription activator SNF2L1 isoform X2

      UniProtKB/TrEMBL
      A0A2I3GEI6
      Conserved Domains (1) summary
      PLN03142
      Location:87 → 1057
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

    7. XM_030806949.1 → XP_030662809.1  probable global transcription activator SNF2L1 isoform X3

      UniProtKB/TrEMBL
      A0A2I3GEI6
      Conserved Domains (1) summary
      PLN03142
      Location:87 → 1046
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    Nucleotide Protein
    Heading Accession and Version

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