U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SALL1 spalt like transcription factor 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 100587390, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SALL1
    Gene description
    spalt like transcription factor 1
    See related
    EnsemblRapid:ENSNLEG00000001008
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SALL1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) 2 NC_044382.1 (69074842..69090188)
    102 previous assembly Nleu_3.0 (GCF_000146795.2) 2 NC_019817.1 (72326758..72341793)

    Chromosome 2 - NC_044382.1Genomic Context describing neighboring genes Neighboring gene uracil-DNA glycosylase-like Neighboring gene uncharacterized LOC115837052 Neighboring gene uncharacterized LOC105739327 Neighboring gene uncharacterized LOC105739325

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sal-like protein 1
    Names
    sal-like 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044382.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      69074842..69090188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012504633.2 → XP_012360087.2  sal-like protein 1

      UniProtKB/TrEMBL
      G1QJT6
      Related
      ENSNLEP00000001181.3, ENSNLET00000001248.3
      Conserved Domains (5) summary
      smart00355
      Location:451 → 473
      ZnF_C2H2; zinc finger
      sd00017
      Location:710 → 730
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1005 → 1025
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1136 → 1158
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:722 → 747
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.