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    HOXD1 homeobox D1 [ Monodelphis domestica (gray short-tailed opossum) ]

    Gene ID: 100026351, updated on 8-May-2024

    Summary

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    Gene symbol
    HOXD1
    Gene description
    homeobox D1
    See related
    EnsemblRapid:ENSMODG00000009604
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Monodelphis domestica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
    Orthologs
    human mouse all
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    Genomic context

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    See HOXD1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 4 NC_077230.1 (188132718..188139615)
    103 previous assembly MonDom5 (GCF_000002295.2) 4 NC_008804.1 (187536989..187539463)

    Chromosome 4 - NC_077230.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130453722 Neighboring gene homeobox D3 Neighboring gene metaxin 2 Neighboring gene uncharacterized LOC103099719

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-D1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMonDom1.pri

    Genomic

    1. NC_077230.1 Reference mMonDom1.pri

      Range
      188132718..188139615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007494418.3 → XP_007494480.1  homeobox protein Hox-D1

      UniProtKB/TrEMBL
      F7A8K3
      Related
      ENSMODP00000011998.4, ENSMODT00000012222.6
      Conserved Domains (1) summary
      pfam00046
      Location:241 → 293
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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